Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P20
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopam...    27   5.5  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    27   5.5  

>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -2

Query: 152 VKYVICQLLNVPCLLIEKVRCGVG------CLYICYANLT*YFPLIRVVPRAEF 9
           V + +  +LN  C+L+ K  C VG      C +I Y N +   P+I  +   EF
Sbjct: 763 VPFFVINILNAVCILLNKDSCQVGYDLFFYCTWIGYMN-SFMNPIIYTIFNTEF 815


>Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical
           protein K09G1.4a protein.
          Length = 705

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -2

Query: 152 VKYVICQLLNVPCLLIEKVRCGVG------CLYICYANLT*YFPLIRVVPRAEF 9
           V + +  +LN  C+L+ K  C VG      C +I Y N +   P+I  +   EF
Sbjct: 628 VPFFVINILNAVCILLNKDSCQVGYDLFFYCTWIGYMN-SFMNPIIYTIFNTEF 680


>AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopamine
           receptor shortvariant protein.
          Length = 705

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -2

Query: 152 VKYVICQLLNVPCLLIEKVRCGVG------CLYICYANLT*YFPLIRVVPRAEF 9
           V + +  +LN  C+L+ K  C VG      C +I Y N +   P+I  +   EF
Sbjct: 628 VPFFVINILNAVCILLNKDSCQVGYDLFFYCTWIGYMN-SFMNPIIYTIFNTEF 680


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -2

Query: 152 VKYVICQLLNVPCLLIEKVRCGVG------CLYICYANLT*YFPLIRVVPRAEF 9
           V + +  +LN  C+L+ K  C VG      C +I Y N +   P+I  +   EF
Sbjct: 763 VPFFVINILNAVCILLNKDSCQVGYDLFFYCTWIGYMN-SFMNPIIYTIFNTEF 815


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,416,713
Number of Sequences: 27780
Number of extensions: 189483
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)