Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P19
(366 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 140 8e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 136 1e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 2e-17
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 74 6e-15
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 29 0.23
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.39
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.69
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.1
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 3.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 3.7
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 3.7
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 24 6.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 24 6.4
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 24 6.4
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 24 6.4
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 8.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 24 8.5
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 24 8.5
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 140 bits (338), Expect = 8e-35
Identities = 60/90 (66%), Positives = 71/90 (78%)
Frame = +3
Query: 96 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGYDSFNTYFSETGAGK 275
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + F+T+FSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 276 DVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 365
VPR+++VDLEP V+D+VRTG YR L+HPE
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPE 90
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 136 bits (329), Expect = 1e-33
Identities = 64/95 (67%), Positives = 74/95 (77%), Gaps = 5/95 (5%)
Frame = +3
Query: 96 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKT---IGGGY--DSFNTYFSE 260
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ + Y D F T+FSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 261 TGAGKDVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 365
TG GK VPR+++VDLEP V+D+VRTG Y+ L+HPE
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPE 94
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 82.2 bits (194), Expect = 2e-17
Identities = 38/89 (42%), Positives = 56/89 (62%)
Frame = +3
Query: 99 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGYDSFNTYFSETGAGKD 278
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + +F ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 279 VPRAVFVDLEPTVVDEVRTGTYRQLYHPE 365
+PRA+ +DLEP VV+ + + TY LY+PE
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPE 89
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 74.1 bits (174), Expect = 6e-15
Identities = 36/90 (40%), Positives = 49/90 (54%)
Frame = +3
Query: 96 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGYDSFNTYFSETGAGK 275
MRE + + GQ G Q+G A W EHG+ G T ++ N YF+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 276 DVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 365
VPRAV VDLEP +D V++G + L+ P+
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPD 88
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 29.1 bits (62), Expect = 0.23
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = +1
Query: 106 ASLYTLAKPESRSEMPAGSCIALSTASNLMVR-CQLTRPSG---VDTTPSTRTSARPEL- 270
A+ Y + E + ++ G I TA N + + R G V P+T++ A+ +
Sbjct: 57 AAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTL 116
Query: 271 ----ARTFPVPSSSILNPL*LTRSALAHTDS 351
A PVP + NPL A H +S
Sbjct: 117 KFLGAEVHPVPVAPFSNPLNYNHQARRHAES 147
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.39
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 136 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVDT-TPSTRTSARPELARTFPVPSSSIL 306
SRS P + ++S A+ Q+T P+ V++ TP T +S L + P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 307 N 309
N
Sbjct: 403 N 403
Score = 25.0 bits (52), Expect = 3.7
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 88 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVDT-TPSTRTSARP 264
+T S+S+ + P + S + S ++++S L +T + V++ TP T ++A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 265 ELARTFPVPSSSILN-PL*LTRSALAHTDSCI 357
L + P+ SSS+LN +T S +T + I
Sbjct: 1278 -LNTSIPITSSSVLNSSTPITSSTALNTSTSI 1308
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 0.69
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 136 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVDTTPSTRTSARPELARTFPVPSSSILN 309
S S + + + ST S+L ++PS T+ ST +SA P + + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 217 PSGVDTTPSTRTSARPELARTFPV 288
P+ V+TTPST TSA + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 225 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 130
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -2
Query: 173 KAIQLPAGISDLDSGLANVYRDALTHFVLSFLNLSVDKIINQSSFS 36
KAI++ I ++S ++ ++ +FVL L ++D I+N S FS
Sbjct: 3135 KAIEVRDLIKIVESRAISLIKNWPENFVLRGLKDAIDAILNLSPFS 3180
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 3.7
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +1
Query: 79 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVDTTPSTRTSA 258
K LN V+ +A + S P+ +C + + + N + + TTP+T +
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 259 RPELARTFPVPSSSILNPL*LT 324
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 4 IPGLQESTRVALNDD*LIILSTLKFKK 84
I G QE R + DD L +L FKK
Sbjct: 96 IEGAQEEIRATIRDDLLEMLKKRAFKK 122
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = +1
Query: 115 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVDTTPSTRTSARPELARTFPVPS 294
++ A+ + S+ + S + Q +PSGV+ T ++R +A+ + T + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 295 SS 300
+
Sbjct: 72 EA 73
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 229 DTTPSTRTSARPELARTFPVPSSSILN 309
D+ S ++ A+PEL RT SSS ++
Sbjct: 107 DSILSAKSKAKPELLRTLTSKSSSAVD 133
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 6.4
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = -2
Query: 281 NVLASSGLAEVRVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRDAL 102
N S GLA ++ ++ D L+ I + I L + D D L ++ ++
Sbjct: 263 NFYKSGGLA---LDLLLKRTDSLIKTFSEILQTGISVLIFLLSKNLDYDFCLNHLISYSM 319
Query: 101 THFVLSFLNLSVDKIINQSSFSATLVDSCS 12
HF+ SF++L + +FS L+ S
Sbjct: 320 HHFIPSFISLLKIPLKTNDAFSKKLITMLS 349
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 185 DAVLKAIQLPAGISDLDSGLANV 117
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.8 bits (49), Expect = 8.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +3
Query: 114 VHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGYDS--FNTYFSETGAGKDVPR 287
V + GVQ A C+ G D +PT + GG +++ Y + G +V
Sbjct: 341 VMIAILGVQFFKASLNRQCVWLGDYGDQYLPTGQFCGGHWENGIKRAYLDKNGFPSNVNP 400
Query: 288 AVFVDLEPTV 317
F+ E +V
Sbjct: 401 RGFICAEKSV 410
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 23.8 bits (49), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 134 SGLANVYRDALTHFVLSFLNLSVDKIINQSSFSATLVDSCSPG 6
S ++ V RDA+ V + K + + + TLV CSPG
Sbjct: 333 SDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPG 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,027
Number of Sequences: 5004
Number of extensions: 32774
Number of successful extensions: 131
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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