Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P18
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    90   1e-19
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    85   3e-18
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    81   5e-17
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    30   0.17 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.7  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   6.5  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   8.6  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 40/66 (60%), Positives = 57/66 (86%)
 Frame = +2

Query: 59  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA++E+++ +ISELN KN+EELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 239 KLSSMP 256
           KLS++P
Sbjct: 61  KLSTVP 66


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 37/66 (56%), Positives = 57/66 (86%)
 Frame = +2

Query: 59  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELN K+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 239 KLSSMP 256
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 81.4 bits (192), Expect = 5e-17
 Identities = 35/66 (53%), Positives = 56/66 (84%)
 Frame = +2

Query: 59  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+ K+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 239 KLSSMP 256
           KL+++P
Sbjct: 61  KLATVP 66


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 EKILSSVGIEADSEKLKKVISELNVKNVEELI 223
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 125  VEKILSSVGIEADSEKLKKVISEL 196
            V++I   VG+E DSE  K  + E+
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEI 1765


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 164 SEKLKKVISELNVKNVEELIE 226
           SE ++ V+ ELN+KN+E  ++
Sbjct: 24  SEIIEHVLEELNLKNIERRVK 44


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 107 SPAAADVEKILS--SVGIEADSEKLKKVISELNVKNVEELIEAGRGKLS 247
           SP++  +  ++   + G   DSEK+K  +  +  K+ ++  E   GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,615
Number of Sequences: 5004
Number of extensions: 14360
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)