Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P18
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 79 2e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 67 6e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 66 1e-11
07_01_1001 - 8460467-8460799 58 2e-09
07_03_0321 + 16757414-16757743 58 4e-09
12_01_0731 - 6516894-6517473,6517485-6519574 27 4.8
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 6.3
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 27 6.3
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 27 8.3
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/66 (54%), Positives = 52/66 (78%)
Frame = +2
Query: 59 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
M+ +AAYLLAVLGG SP+A D++ IL SVG+EA+ E+L+ ++SEL K++ E+I AGR
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 239 KLSSMP 256
K +S+P
Sbjct: 61 KFASVP 66
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 66.9 bits (156), Expect = 6e-12
Identities = 29/66 (43%), Positives = 48/66 (72%)
Frame = +2
Query: 59 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
M++++AYL+A L G +SP A D+ IL SVG E D+ K++ ++S+++ K++ ELI GR
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 239 KLSSMP 256
K +S+P
Sbjct: 61 KFASVP 66
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/67 (43%), Positives = 48/67 (71%)
Frame = +2
Query: 56 KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGR 235
+M++++AYLLA L G +P+A D+ IL SVG E D K++ ++S+L K++ E+I +GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 236 GKLSSMP 256
K +S+P
Sbjct: 253 EKFASVP 259
>07_01_1001 - 8460467-8460799
Length = 110
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +2
Query: 59 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
MR+VAAYL+A +GG ASP DV IL +VG + D +KL + ++ K++ E++ AG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 239 KLS 247
L+
Sbjct: 61 MLA 63
>07_03_0321 + 16757414-16757743
Length = 109
Score = 57.6 bits (133), Expect = 4e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +2
Query: 59 MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
MR+VAAYL+A +GG ASP DV IL +VG + D +KL + ++ K++ E++ AG
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 239 KLS 247
L+
Sbjct: 61 MLA 63
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 87 PCWAAKRPQLLLMSKRSSALWG 152
PCW +K PQLL++ +S+ G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 104 ASPAAADVEKILSSVGIEADSEK-LKKVISELNVKNVEELIEAGRGKLSSMP 256
+ P EKI+S IEA SEK + + I K + E IEA K+ S P
Sbjct: 392 SEPIDTQTEKIISD-PIEAQSEKIISEPIDAQTEKIISEPIEAQSEKIISEP 442
>07_03_1287 +
25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 101 KASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAG 232
K AAA V LS+V E D+ K K ++ V+ ++E EAG
Sbjct: 571 KTKTAAATVNTRLSAVLKEIDASKASKKLAFAAVQALQESEEAG 614
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 92 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAG 232
+G ASPAAA+++ + + I A + V +E+ + +E + G
Sbjct: 52 IGRPASPAAAEMDTVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGG 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,917,693
Number of Sequences: 37544
Number of extensions: 106493
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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