Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P18
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    73   7e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    69   1e-12
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    33   0.11 
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    29   1.1  
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    26   9.8  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    26   9.8  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    26   9.8  
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    26   9.8  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +2

Query: 59  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
           MRYV+AYLLAVLGG A+P   D++ ILS+VG++AD+E  K V+S L  K VEELI  G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 239 KLSSM 253
            L S+
Sbjct: 61  GLVSV 65


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 32/66 (48%), Positives = 44/66 (66%)
 Frame = +2

Query: 59  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRG 238
           M+Y+ AYLLA LGG ASP+A DV K+L + G++ D E    V+  L  K + E+I  G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 239 KLSSMP 256
           KLSS+P
Sbjct: 61  KLSSVP 66


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 77  YLLAVLGGKAS---PAAADVEKILSSVGIEADSEKLKKVISELNVKNVEELIEAGRGKLS 247
           +LL V  G+ S     A D EKILS   +  D+EK  +V+    V ++ + ++  RGKLS
Sbjct: 411 WLLGVCSGQMSYKKEVAVDAEKILSR--LYPDAEKRNEVLYHFGVSSILKGLDRPRGKLS 468


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +2

Query: 26  QYTFRVLAT*KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNVK 205
           Q  FR+L   K   +A  L +++    S   + + +IL + G++ DSE++ K   E +  
Sbjct: 186 QLDFRILTEGKFVRIAPTLGSIVHN--STMISMISEILEANGVQPDSEEISKEFEEYSSL 243

Query: 206 NVEELIEAGRGKLS-SMP 256
            ++       GKLS S+P
Sbjct: 244 QMKLAKYQSSGKLSISLP 261


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 122 DVEKILSSVGIEADSEKLKKVISELNVKNVEELI 223
           D+ ++LSS G+E   + L   +  ++ +NVE+++
Sbjct: 325 DILRVLSSPGLEVRKKTLSLALDLVSSRNVEDMV 358


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 101 KASPAAADVEKILSSVGIEADS----EKLKKVISELNVKNVEE 217
           KA   A ++EKI   V    DS    EKL+K + E + K VEE
Sbjct: 850 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 892


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 101 KASPAAADVEKILSSVGIEADS----EKLKKVISELNVKNVEE 217
           KA   A ++EKI   V    DS    EKL+K + E + K VEE
Sbjct: 850 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 892


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +2

Query: 152 IEADSEKLKKVISELNV-----KNVEELIEAGRGKLSS 250
           +EA  EKL+ VIS+L V     KN  E +E  R  L S
Sbjct: 403 VEAAKEKLESVISDLQVEVKALKNKVEFLEKERENLQS 440


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
           protein.
          Length = 1966

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 101 KASPAAADVEKILSSVGIEADS----EKLKKVISELNVKNVEE 217
           KA   A ++EKI   V    DS    EKL+K + E + K VEE
Sbjct: 853 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 895


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 IEADSEKLKKVISELNVKNVEELIEAGRGKLSSM 253
           I+ D E LKK++ E +   V  LIE+    L+SM
Sbjct: 381 IKLDHESLKKLLDEGDALEVMSLIESVFSSLASM 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,407,916
Number of Sequences: 27780
Number of extensions: 81580
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)