Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P13
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 147 3e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 147 3e-37
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.11
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.32
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 0.75
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 0.99
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 1.3
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 1.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 2.3
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 2.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 4.0
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 5.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 23 5.3
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 7.0
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 23 7.0
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 23 9.2
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 9.2
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 23 9.2
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 23 9.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 147 bits (356), Expect = 3e-37
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVK 262
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 147 bits (356), Expect = 3e-37
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVK 262
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.11
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 230 G 232
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.32
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 0.75
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GRFVENTMGRRPARCYRYCKNKPYPK 85
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 0.99
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL 208
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 1.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 2.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 196
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 2.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 135 WAKRERQWMTSH 170
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 200 EQLSSEALEAGRICCN 247
E LSS+ + RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 125 IFDLGKKRATVDDFPLCVH 181
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 23.4 bits (48), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 11 RFVENTMGRRPARCYRYCKNKPYP 82
RFV T GRRP+ C + PYP
Sbjct: 407 RFVSMTTGRRPSIPLE-CISIPYP 429
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 7.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 197 THQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPD-KTEI 84
T + L I+ +H L+ + +R+ GSL PD KT++
Sbjct: 133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQV 171
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 7.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 58 SITSRWSAPHC 26
+I SRW PHC
Sbjct: 496 TIKSRWEIPHC 506
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 9.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 133 VENTDLWVRHTPTKP 89
+ENT LW TPT P
Sbjct: 363 MENTLLWNHITPTSP 377
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 22.6 bits (46), Expect = 9.2
Identities = 5/20 (25%), Positives = 14/20 (70%)
Frame = +2
Query: 167 PLCVHLVSDEYEQLSSEALE 226
P+C+ + DE+E++ ++ +
Sbjct: 66 PICIDNIPDEFEEIDAKTFD 85
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 22.6 bits (46), Expect = 9.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 85 ISVLSGCA*PKDPYFRL 135
I L CA +DPYFRL
Sbjct: 229 IPCLIPCAIDQDPYFRL 245
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 22.6 bits (46), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 113 PKI--RIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 214
PKI + +GK ++ FPL + +S Q SS
Sbjct: 93 PKIINDVLVIGKSDGLINSFPLSQNYISSSESQTSS 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,804
Number of Sequences: 5004
Number of extensions: 20909
Number of successful extensions: 69
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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