Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P13
(263 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 135 5e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 130 1e-31
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 115 6e-27
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.17
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 0.51
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 28 0.89
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 3.6
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 3.6
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 4.8
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 26 4.8
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 25 6.3
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 25 6.3
06_01_1064 - 8609162-8610583 25 6.3
06_01_1060 + 8522131-8523606 25 6.3
05_03_0363 - 12983243-12983304,12983526-12983658 25 6.3
03_05_0411 - 23972738-23973606,23977701-23977794,23978487-239785... 25 6.3
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 25 6.3
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 25 6.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 135 bits (326), Expect = 5e-33
Identities = 59/78 (75%), Positives = 66/78 (84%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYLVK 262
SSEALEA RI CNKY+ K
Sbjct: 61 SSEALEAARIACNKYMTK 78
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 130 bits (314), Expect = 1e-31
Identities = 56/74 (75%), Positives = 63/74 (85%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 220
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 221 LEAGRICCNKYLVK 262
LEA RI CNKY+ K
Sbjct: 372 LEAARIACNKYMAK 385
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 115 bits (276), Expect = 6e-27
Identities = 50/71 (70%), Positives = 58/71 (81%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 230 GRICCNKYLVK 262
RI CNKY+ K
Sbjct: 64 ARIACNKYMTK 74
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 257 RGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLS 150
R CC GL P P S+ R+ +L A S P+S
Sbjct: 179 RSRCCRHRGLSPPPSRSSPRSPSSLPAAPAASLPVS 214
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 0.51
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 152 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 262
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 71 YSYNIDNISLVGAPLCSPQSD 9
Y Y D I L+G PLC P SD
Sbjct: 168 YLYPYDEIVLLGIPLCVPWSD 188
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 59 YCKNKPYPKSRFCRGVPDPKIRIFDL--GKKRATVDDFPLCVHLVSDEYEQLSSE 217
+CK+ P KS + G+P P FD+ GK R ++ L +V+D + + E
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVADMENENTDE 193
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 59 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 151
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 44 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 181
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTH 451
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 74 PYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSE 217
P P S G PD +++F R D P ++VS +Y+ SS+
Sbjct: 1053 PSPGSFSFGGDPDTFLQVFIWNGTRPVSRDGPWTGYMVSSQYQANSSD 1100
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 122 RIFDLGKKRATVDDFPL 172
R+ DLGK+RA + D PL
Sbjct: 76 RLEDLGKRRARLQDIPL 92
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 32 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIF 130
GRR R R C+ + P++RF R V D F
Sbjct: 49 GRRGRRPRRACEEEEKPQARFRRVVADNSYSAF 81
>06_01_1064 - 8609162-8610583
Length = 473
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 103 TPTKPRFRIRFILTISITSRWSAPHCVLHK 14
+P K RFR++ ++ + SA HCV +
Sbjct: 266 SPAKARFRLKHVVRTLTGAEDSAHHCVFQE 295
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 103 TPTKPRFRIRFILTISITSRWSAPHCVLHK 14
+P K RFR++ ++ + SA HCV +
Sbjct: 284 SPAKARFRLQHVVRTLTAAEDSAYHCVFQE 313
>05_03_0363 - 12983243-12983304,12983526-12983658
Length = 64
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 218 PQNSAARTHQTLSARIVGSHPLSLSFCP 135
P A TH L A V S PL +FCP
Sbjct: 21 PALHPASTHPALIAVSVASLPLPQNFCP 48
>03_05_0411 -
23972738-23973606,23977701-23977794,23978487-23978549,
23979558-23979630,23980325-23980375,23980491-23980906,
23981066-23981396,23983165-23983223,23983799-23983975
Length = 710
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 101 GVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 250
G+ DP + D G+K A P + V Q+SS A EA NK
Sbjct: 155 GIDDPVKKEIDNGEKHAQNSSLPTNLGKVPQTRRQMSSNA-EASNHSSNK 203
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 35 RRPARCYRYCKNKPYPKSRFCRGVPDPKIR 124
R P++ +RY + P P++R R P P I+
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQ 1055
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 166 EVIHCRSLFAQVENTDLWVRHTPTKP 89
+V+HC S + + LW+R P P
Sbjct: 473 DVVHCPSCSSYLHPPRLWLRAAPESP 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,782,271
Number of Sequences: 37544
Number of extensions: 150676
Number of successful extensions: 374
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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