Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P13
         (263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   0.48 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   1.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   4.5  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   5.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   7.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   7.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   7.8  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 230 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 111
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 102 VCLTQRSVFSTWAKRERQWMTSH 170
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 10 SLCGEHNGAPTSEMLS 57
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 10 SLCGEHNGAPTSEMLS 57
          SLCG H     +E+LS
Sbjct: 49 SLCGRHEKRLLNELLS 64


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +3

Query: 102 VCLTQRSVFSTWAKRERQWMTSHYACT 182
           +CLT+R +   +  R  +W   +   T
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKENARAT 71


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 176 VHLVSDEYEQL 208
           VH+  DEY+++
Sbjct: 43  VHITKDEYDEI 53


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 176 VHLVSDEYEQL 208
           VH+  DEY+++
Sbjct: 43  VHITKDEYDEI 53


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 102 VCLTQRSVFSTWAKRERQW 158
           +CLT+R +   +  R  +W
Sbjct: 307 LCLTERQIKIWFQNRRMKW 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,918
Number of Sequences: 438
Number of extensions: 1613
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)