Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P08
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    96   1e-21
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    96   1e-21
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   1.1  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   2.8  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   2.8  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   2.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   4.9  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   4.9  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    24   6.5  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    23   8.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   8.6  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    23   8.6  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 96.3 bits (229), Expect = 1e-21
 Identities = 46/100 (46%), Positives = 55/100 (55%)
 Frame = +2

Query: 23  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 202
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 203 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPV 322
           +H+ +N  + P +NLD+LWTLV  + R KY        PV
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPV 100


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 95.9 bits (228), Expect = 1e-21
 Identities = 46/100 (46%), Positives = 56/100 (56%)
 Frame = +2

Query: 23  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 202
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 203 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPV 322
           +H+ +N  + P +NLD+LWTL+  +AR KY        PV
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPV 100


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect(2) = 1.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 134 HHQHYHVHQD 105
           HH H+H H D
Sbjct: 305 HHHHHHSHDD 314



 Score = 22.2 bits (45), Expect(2) = 1.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 143 DGAHHQHYHVH 111
           +G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 194 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 286
           M NY  +R  D   +LNL K W  +   AR+
Sbjct: 36  MDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 194 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 286
           M NY  +R  D   ++NL K W  +   AR+
Sbjct: 37  MENYVWKRRSDGIHIINLGKTWEKLVLAARV 67


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 299 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 126
           ++H +     RP+  V    +  +GR+      G  +    +  QGG       +G HH 
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744

Query: 125 HYHVH 111
           H+H H
Sbjct: 745 HHHHH 749


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 319 RHLAICGRCIL*SCLLRDQSPQ 254
           RH  +CGR I   C+L    PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 194 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPV 322
           + NY ++    FCP L  D    +    +  KY  A   K+ V
Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINV 162


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 19  KYGHLQEEDQEVERTREPW 75
           KYG  +E + + E  R PW
Sbjct: 87  KYGRKEEGESQEESKRSPW 105


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 182 GKLGMRNYHMRRNKD 226
           GK+  RNY +R N+D
Sbjct: 196 GKIWFRNYEIRENED 210


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 167 HPGYFGKLGMRNYHMRRNKDFCPVLNLDKL 256
           HP YF  L    +     +D C +L+  K+
Sbjct: 741 HPPYFDDLATTTFSSLLKRDECTILSFFKI 770


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 242 LKQGR-NPCFFSCGNFSY 192
           LK GR +P FF+ GNF++
Sbjct: 24  LKSGRKSPYFFNSGNFTH 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,301
Number of Sequences: 5004
Number of extensions: 22103
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)