Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P06
(238 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 87 4e-19
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 87 4e-19
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 27 0.25
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 27 0.44
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 1.0
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 1.0
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 1.3
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 1.8
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 25 1.8
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc... 24 3.1
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 23 4.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 23 4.1
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 23 4.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 23 5.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 5.4
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 22 9.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 22 9.4
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 22 9.4
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 22 9.4
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 22 9.4
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 22 9.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 86.6 bits (205), Expect = 4e-19
Identities = 41/62 (66%), Positives = 49/62 (79%)
Frame = +2
Query: 53 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGVFXKYRALRL 232
MGI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RG K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 233 DT 238
D+
Sbjct: 61 DS 62
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 86.6 bits (205), Expect = 4e-19
Identities = 41/62 (66%), Positives = 49/62 (79%)
Frame = +2
Query: 53 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGVFXKYRALRL 232
MGI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RG K+RALRL
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 233 DT 238
D+
Sbjct: 61 DS 62
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 0.25
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 155 WQPGDLTHTSSSYEWAHVC 99
W PG SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 0.44
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 36 FLTQPRWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLPTLSLVPNAS 182
FL P +++IG GG + F+R + S P +S + A+
Sbjct: 228 FLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGAT 276
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 103 FAARSPPLMPMITTDTHLGWVRKEKIYL 20
F+ + L+P+ITT THL V +K L
Sbjct: 1201 FSEKYTQLIPVITTYTHLSEVENKKYSL 1228
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 38 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 157
S+ K G + RRA A RKK K + GRP +N
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 68 DHWHKRRATGGKRAPIRKKRKYE 136
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 SDPAK-MGISRDHWHKRRATGGKRAPIR 118
SDP + SR H H+ R+T K P R
Sbjct: 26 SDPVTVLDRSRTHHHRGRSTSSKAQPFR 53
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 207 NTPRDLTKWMRWGPSLVLAAG 145
NTP TK +RW +LVL G
Sbjct: 4 NTPHSFTKTLRWS-ALVLGLG 23
>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 266
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Frame = -2
Query: 204 TPRDLTKWMRWG-PSL 160
+P+D+ KW RW PSL
Sbjct: 33 SPQDILKWCRWTLPSL 48
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 158 CWQPGDLTHTSSSY 117
CW+P D TS++Y
Sbjct: 501 CWRPADGNETSAAY 514
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 177 RWGPSLVLAAGRPNSYFLFLRMGARLPPVAL 85
RW + + + RP LF+R GARL P ++
Sbjct: 380 RWFLNGIASLARPK-VCLFVRNGARLGPTSI 409
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 130 LPLLTNGRT---FAARSPPLMPMITTDTHLGWVRKEKIYLTEQ 11
+PL ++ T + +PPL+ +++TD+ + +V I L Q
Sbjct: 271 IPLFSSDFTDFLYKKMAPPLLTLLSTDSEIQYVALRNINLILQ 313
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 146 PAANTKLGPQRIHLVRSRGVF 208
P++ T P + H+VR G+F
Sbjct: 1043 PSSTTSAEPLQKHIVRKSGIF 1063
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2
Query: 204 TPRDLTKWM 178
TPRDLT+W+
Sbjct: 2718 TPRDLTRWL 2726
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 101 KRAPIRKKRKYELGRPAANTKLGPQRIHLV 190
+ P K R ++LGR A P IHLV
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLV 53
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 133 ILPLLTNGRTFAARSPPLMPMITTDTHLGWVRKEKIYLT 17
+LP ++ A P L+ + D WVR +K+Y T
Sbjct: 325 LLPRESSEAFSEALIPSLLALKDVDNAPVWVRAKKLYET 363
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 44 PAKMGISRDHWHKRRATGGKRAPIRKKRK 130
PAK I + W K++ KR R+KRK
Sbjct: 511 PAK--IKNEAWSKQKEVKEKRNTRREKRK 537
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 47 AKMGISRDHWHKRRATGGKRAPIRK 121
AK G D H+R GKR I K
Sbjct: 371 AKWGFRLDDIHRRTCFNGKRLYITK 395
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 101 KRAPIRKKRKYELGRPAANTKLGPQRIHLV 190
+ P K R ++LGR A P IHLV
Sbjct: 24 RAVPDSKIRIFDLGRKRAGVDEFPLCIHLV 53
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 150 AGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPI 52
A RP+ + GA P LL CQ +++I +
Sbjct: 406 ARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQV 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,824
Number of Sequences: 5004
Number of extensions: 18599
Number of successful extensions: 46
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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