Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P06
(238 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 80 2e-16
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 80 2e-16
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 0.70
01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311... 28 1.2
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 27 1.6
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 27 2.1
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 2.1
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 25 6.5
09_04_0327 + 16700235-16700312,16701756-16701978,16702488-167027... 25 6.5
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 25 6.5
04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584 25 6.5
04_01_0368 + 4839043-4839483 25 6.5
06_01_0913 - 7042230-7043332,7043420-7043621 25 8.6
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 80.2 bits (189), Expect = 2e-16
Identities = 42/63 (66%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGVFXKYRALR 229
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RG K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 230 LDT 238
LDT
Sbjct: 61 LDT 63
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 80.2 bits (189), Expect = 2e-16
Identities = 42/63 (66%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGVFXKYRALR 229
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RG K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 230 LDT 238
LDT
Sbjct: 61 LDT 63
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 155 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 63
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>01_05_0726 -
24630080-24630778,24630899-24631011,24631088-24631169,
24631248-24631337,24631412-24631469,24631661-24631756,
24631835-24631908,24632006-24632068,24634111-24634320,
24634869-24635048
Length = 554
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 2 HEGLFCQINLFFSDPAKMGISRDHWHKRRATGGKRAP 112
+EG +C+++L FS + + ++ R TGG AP
Sbjct: 302 YEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAP 338
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 85 PLMPMITTDTHLGWVRKEKI 26
P++PM+ T THL W RK +
Sbjct: 162 PIVPMVVTGTHLAW-RKNSL 180
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 80 KRRATGGKRAPIRKKRKYELGRPAA 154
KRR GG+RA R+K + E GR A
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKA 69
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 80 KRRATGGKRAPIRKKRKYELGRPAA 154
KRR GG+RA R+K + E GR A
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKA 105
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 KRRATGGKRAPIRKKRKYELGRPAA 154
+RR GG+RA R+K + E GR A
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKA 33
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 195 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 79
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 77 HKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 199
H+ G PI++ + + R + N+K+ P + V+SR
Sbjct: 211 HRAARCFGNGRPIQESSEMKYDRGSFNSKVSPSEVGYVQSR 251
>09_04_0327 +
16700235-16700312,16701756-16701978,16702488-16702730,
16702815-16702865,16702965-16703225,16703319-16703371,
16703446-16703815,16703906-16704750
Length = 707
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 74 WHKRRATGGKRAPIRKKRKYELGRPAANTKL-GPQRIHLVRSRGVFXK 214
WH + T G+R+P + + E R A + G R ++ G F K
Sbjct: 624 WHIQMDTDGRRSPEEEMAQLEAARLAGVVHVRGKMRFYVGEDAGWFDK 671
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 170 DQA*CWQPGDLTHTSSSYEW 111
D + CW GD+ SY W
Sbjct: 73 DDSVCWAVGDILEAFDSYSW 92
>04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584
Length = 253
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 56 GISRDHWHKRRATGGKRA 109
G+ D WH+RRA +RA
Sbjct: 4 GVGADQWHQRRAGSCQRA 21
>04_01_0368 + 4839043-4839483
Length = 146
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 56 GISRDHWHKRRATGGKRA 109
G+ D WH+RRA +RA
Sbjct: 110 GVGADQWHQRRAGSCQRA 127
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 174 WGPSLVLAAGRPNSY 130
W P L +AAGRP ++
Sbjct: 201 WAPFLAMAAGRPENF 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,388,431
Number of Sequences: 37544
Number of extensions: 142630
Number of successful extensions: 389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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