Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P06
(238 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 88 9e-19
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.19
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.19
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.19
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 0.44
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 27 1.3
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 3.1
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 3.1
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 26 4.1
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 26 4.1
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 26 4.1
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 25 5.4
L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 25 5.4
Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 25 7.2
M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein. 25 7.2
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 25 7.2
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 25 7.2
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 25 7.2
AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut ... 25 7.2
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 25 9.5
U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical p... 25 9.5
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 25 9.5
U42836-1|ABC48243.1| 497|Caenorhabditis elegans Hypothetical pr... 25 9.5
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 25 9.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 87.8 bits (208), Expect = 9e-19
Identities = 41/62 (66%), Positives = 47/62 (75%)
Frame = +2
Query: 53 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGVFXKYRALRL 232
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RG KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 233 DT 238
D+
Sbjct: 61 DS 62
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 174 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 49
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 174 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 49
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 174 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 49
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.1 bits (62), Expect = 0.44
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 26 NLFFSDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGV 205
N FS P + H KRR KR+ +R + EL P T+ + V RG+
Sbjct: 194 NSSFSPPRRHATREVHSRKRRHDDKKRSTVRPEVSKELTFPVVATQKCLSLLEFVEKRGL 253
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 44 PAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 163
P + G D W R+ G P++K A NTK
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 186 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 97
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 186 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 97
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 196
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 196
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 38 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRG 202
++ A++ R +R++ KRA +K RK E +P G HL+ S G
Sbjct: 257 AESARLRYQRMTPDERKSYNMKRAAAKKTRKEEEEKPDDMEHYGDNEEHLMDSSG 311
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 38 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI 181
S A MG R AT +PI+K K+E+ A +T ++I
Sbjct: 486 SPQAPMGSGERRKATRLATSATNSPIKKVAKHEVPATAPSTPAKKRKI 533
>L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical
protein ZK1236.5 protein.
Length = 148
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 71 HWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 199
HW++R G R PI ++K GRP + + R++++R R
Sbjct: 15 HWNRRIWEVGYRGPILPQQK-ATGRP--DYPVSANRVNILRER 54
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 38 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI 181
S A MG R AT +PI+K K+E+ A +T ++I
Sbjct: 486 SPQAPMGSGERRKATRLATSATNSPIKKVAKHEVPATAPSTPAKKRKI 533
>Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical
protein H03G16.2 protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 183 WMRWGPSLVLAAGRPNSYFLFLRMGARLP 97
W R G + L + +P+ +FL + + +LP
Sbjct: 70 WGRAGEGVFLTSDKPDGFFLLVGIQQKLP 98
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 92 TGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVR 193
T K IR K Y+ G AN LGP + L+R
Sbjct: 65 TSNKNDSIRNK--YDFGMSVANNILGPFEMKLLR 96
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 92 TGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVR 193
T K IR K Y+ G AN LGP + L+R
Sbjct: 65 TSNKNDSIRNK--YDFGMSVANNILGPFEMKLLR 96
>M96145-1|AAA28057.1| 562|Caenorhabditis elegans elastase protein.
Length = 562
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 216 YLXNTPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMG 109
++ P +L K P+L+ + + SYF L MG
Sbjct: 294 FMTKNPEELIKESPVKPTLIGMSNKEGSYFAALNMG 329
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 201 PRDLTKWMRWGPSLVLAAGRPN 136
PR++ +W+RW V A+ + N
Sbjct: 543 PRNVARWLRWDKPPVAASKKKN 564
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 201 PRDLTKWMRWGPSLVLAAGRPN 136
PR++ +W+RW V A+ + N
Sbjct: 288 PRNVARWLRWDKPPVAASKKKN 309
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 65 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRS 196
R+ G +R+P R +R+ + P N + P+R + RS
Sbjct: 55 RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRS 98
>AF016680-3|AAB66165.2| 562|Caenorhabditis elegans Abnormal gut
esterase protein 1 protein.
Length = 562
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 216 YLXNTPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMG 109
++ P +L K P+L+ + + SYF L MG
Sbjct: 294 FMTKNPEELIKESPVKPTLIGMSNKEGSYFAALNMG 329
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 180 MRWGPSLVLAAGRPNSYFLFLRM 112
MRWG SL L G+P + F M
Sbjct: 1352 MRWGESLRLFDGKPIKIYHFFLM 1374
>U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical
protein T22F3.10 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 186 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP--PVALLLCQ*SRLIPILA 46
KW+ W + G L+++ GAR P ++ C + L+P+ A
Sbjct: 28 KWIMWAVAAGTIIGTIPINLLYVKYGARYPFLIAGVVSCLATALVPLAA 76
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 204 TPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP--PVALLLCQ*SRLIPILA 46
TP D KW+ W + G L ++ GAR P ++ C + LIP A
Sbjct: 90 TPDD-KKWILWAVAAGTIIGTVPMNLLLVKYGARFPFFLSGIVSCISTSLIPFAA 143
>U42836-1|ABC48243.1| 497|Caenorhabditis elegans Hypothetical
protein T21F2.1a protein.
Length = 497
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 77 HKRRATGGKRAPIRKKR 127
H RR GGKR RK+R
Sbjct: 56 HDRRREGGKRKKFRKER 72
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 180 MRWGPSLVLAAGRPNSYFLFLRM 112
MRWG SL L G+P + F M
Sbjct: 1352 MRWGESLRLFDGKPIKIYHFFLM 1374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,892,347
Number of Sequences: 27780
Number of extensions: 108465
Number of successful extensions: 274
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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