Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P06
         (238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   120   2e-30
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   3.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   3.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   6.2  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  120 bits (289), Expect = 2e-30
 Identities = 55/62 (88%), Positives = 57/62 (91%)
 Frame = +2

Query: 53  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGVFXKYRALRL 232
           MGISRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RG   KYRALRL
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRL 60

Query: 233 DT 238
           DT
Sbjct: 61  DT 62


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 74  WHKRRATGGKRAP 112
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 138 NSYFLFLRMGARLPPVALLLCQ*SRLIPILAGSEK 34
           +SY +F  MG+   P+ ++L    R+  ++A   +
Sbjct: 196 SSYVIFSAMGSFFLPMLVMLYVYGRISCVIASRHR 230


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 79  MPMITTDTHLGW 44
           M ++ TD+HL W
Sbjct: 95  MTLMWTDSHLSW 106


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +2

Query: 74  WHKRRATGGKRAP 112
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 20  QINLFFSDPAKMGISRDHW 76
           Q+NL  SDPA     R HW
Sbjct: 848 QLNLLASDPAVYEDWR-HW 865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,161
Number of Sequences: 438
Number of extensions: 1131
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)