Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P03
         (167 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62841 Cluster: 40S ribosomal protein S15; n=46; cellul...    48   5e-05
UniRef50_Q01855 Cluster: 40S ribosomal protein S15; n=140; Eukar...    41   0.005
UniRef50_UPI0000DD8522 Cluster: PREDICTED: similar to 40S riboso...    38   0.033
UniRef50_Q9FML6 Cluster: 40S ribosomal protein S15-6; n=9; Eukar...    38   0.044
UniRef50_P15010 Cluster: 30S ribosomal protein S19P; n=5; Euryar...    33   1.3  
UniRef50_Q6LX07 Cluster: 30S ribosomal protein S19P; n=9; Euryar...    32   2.2  
UniRef50_Q975I5 Cluster: 30S ribosomal protein S19P; n=8; Archae...    31   6.7  
UniRef50_Q4KMH6 Cluster: Zgc:110594; n=4; Clupeocephala|Rep: Zgc...    30   8.9  

>UniRef50_P62841 Cluster: 40S ribosomal protein S15; n=46; cellular
           organisms|Rep: 40S ribosomal protein S15 - Homo sapiens
           (Human)
          Length = 145

 Score = 47.6 bits (108), Expect = 5e-05
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGLK 165
           GVDLDQLLDM  EQLM+L  AR RRR  RGL+
Sbjct: 19  GVDLDQLLDMSYEQLMQLYSARQRRRLNRGLR 50


>UniRef50_Q01855 Cluster: 40S ribosomal protein S15; n=140;
           Eukaryota|Rep: 40S ribosomal protein S15 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 142

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           GVDL++LL+M  E  ++L  AR RRRFARG+
Sbjct: 19  GVDLEKLLEMSTEDFVKLAPARVRRRFARGM 49


>UniRef50_UPI0000DD8522 Cluster: PREDICTED: similar to 40S ribosomal
           protein S15 (RIG protein); n=2; Homo sapiens|Rep:
           PREDICTED: similar to 40S ribosomal protein S15 (RIG
           protein) - Homo sapiens
          Length = 134

 Score = 38.3 bits (85), Expect = 0.033
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           GVDLDQLLDM +EQ M+L  AR RRR   GL
Sbjct: 32  GVDLDQLLDMSSEQRMQLNSAR-RRRLNPGL 61


>UniRef50_Q9FML6 Cluster: 40S ribosomal protein S15-6; n=9;
           Eukaryota|Rep: 40S ribosomal protein S15-6 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 160

 Score = 37.9 bits (84), Expect = 0.044
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGLK 165
           G ++D LL M N  L +L +AR RRRF RGLK
Sbjct: 28  GFNVDALLKMSNVDLAKLFNARVRRRFYRGLK 59


>UniRef50_P15010 Cluster: 30S ribosomal protein S19P; n=5;
           Euryarchaeota|Rep: 30S ribosomal protein S19P -
           Halobacterium salinarium (Halobacterium halobium)
          Length = 140

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           G DLD+L +M  E + EL+ AR RR   RGL
Sbjct: 17  GHDLDELQEMSLEDVAELLPARQRRTITRGL 47


>UniRef50_Q6LX07 Cluster: 30S ribosomal protein S19P; n=9;
           Euryarchaeota|Rep: 30S ribosomal protein S19P -
           Methanococcus maripaludis
          Length = 161

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           G  L++L +MP ++ ME++ +R RR  ARG+
Sbjct: 35  GFSLEELQEMPIKKFMEIVPSRQRRTMARGI 65


>UniRef50_Q975I5 Cluster: 30S ribosomal protein S19P; n=8;
           Archaea|Rep: 30S ribosomal protein S19P - Sulfolobus
           tokodaii
          Length = 140

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARG 159
           G  LD+LL+MP ++ ++L+ +R RR   +G
Sbjct: 16  GKSLDELLNMPMDEFIKLLPSRQRRSLKKG 45


>UniRef50_Q4KMH6 Cluster: Zgc:110594; n=4; Clupeocephala|Rep:
           Zgc:110594 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 322

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 73  VDLDQLLDMPNEQLMELMHARARRRF 150
           VD D +L+ P E+ +  +HA+ +RRF
Sbjct: 142 VDADAVLEDPEEESLRFLHAKEKRRF 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,423,588
Number of Sequences: 1657284
Number of extensions: 1744102
Number of successful extensions: 3163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3162
length of database: 575,637,011
effective HSP length: 35
effective length of database: 517,632,071
effective search space used: 10352641420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)