Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P03
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    47   3e-07
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    47   3e-07
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   1.8  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    22   9.4  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 47.2 bits (107), Expect = 3e-07
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           GV+L+QLLD+  EQL++L HARARRR  RGL
Sbjct: 27  GVELEQLLDLSAEQLVDLFHARARRRMLRGL 57


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 47.2 bits (107), Expect = 3e-07
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGL 162
           GV+L+QLLD+  EQL++L HARARRR  RGL
Sbjct: 28  GVELEQLLDLSAEQLVDLFHARARRRMLRGL 58


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARR 144
           G+D+D L D+ NE+   ++H  ++R
Sbjct: 26  GLDIDDLWDIYNEKTRRMIHIISQR 50


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 193

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 29 LLRKNVHSGSLPSEESI 79
          L+ KN+HSG+  S  SI
Sbjct: 42 LVSKNIHSGNSASSTSI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,663
Number of Sequences: 5004
Number of extensions: 7356
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)