Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P03
         (167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...    47   2e-06
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...    47   2e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400...    28   0.88 
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553...    27   1.5  
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573...    27   2.7  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    26   4.7  
10_08_0330 - 16816497-16819952                                         25   8.2  

>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGLK 165
           GVDLD LLDM  + L++L  ARARRRF RGLK
Sbjct: 135 GVDLDALLDMSTDDLVQLFPARARRRFQRGLK 166


>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGLK 165
           GVDLD LLDM  + L++L  ARARRRF RGLK
Sbjct: 263 GVDLDALLDMSTDDLVQLFPARARRRFQRGLK 294


>02_02_0474 +
           10738476-10738797,10739568-10739677,10739891-10740094,
           10740400-10740576,10740659-10740811,10741535-10741624,
           10741939-10742049,10742169-10742285,10742881-10743032,
           10743116-10743200,10743597-10743691,10744211-10744376,
           10744459-10744654,10745662-10745795
          Length = 703

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 87  LI*IDSSEGKLPECTFFLKSFIDLSHA 7
           L+ +DS EG +P+  F LK  ++  HA
Sbjct: 210 LLVVDSVEGPMPQTRFVLKKALEFGHA 236


>11_06_0356 -
           22654329-22654571,22654695-22654898,22655065-22655319,
           22655435-22655626,22655738-22656046,22656149-22656355,
           22656450-22656527,22657493-22657747,22657850-22658000,
           22658269-22658500,22658631-22658886,22658960-22659091
          Length = 837

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 85  QLLDMPNEQLMELMHARARRRF 150
           +LL+MP+++ +EL+H    RRF
Sbjct: 245 KLLEMPSQEFIELVHENWSRRF 266


>10_08_0165 +
           15356748-15356811,15357113-15357186,15357311-15357394,
           15357508-15357602,15357737-15357790,15357791-15357896,
           15358236-15358277,15358585-15358674,15358788-15358984,
           15359355-15359413,15360166-15362252
          Length = 983

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 128 CINSMSCSLGMSRS*SKSTPRKVNFLNVRF 39
           CI S+S S+G++R+ S +    +NF  V+F
Sbjct: 234 CIRSISESVGLNRNWSMTVETMINFSCVQF 263


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 152 ANRLRARACINSMSCSLGMSRS*SKSTPRKVN 57
           A R ++R+ +   S S+   RS SKS PR V+
Sbjct: 475 ARRSKSRSPLREKSVSMSPRRSMSKSLPRSVS 506


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/20 (50%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = -3

Query: 63  GKLPECTFFLKS--FIDLSH 10
           GKLP+C ++L++  F+DLS+
Sbjct: 777 GKLPDCLWYLQNLQFLDLSN 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,152,767
Number of Sequences: 37544
Number of extensions: 53622
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)