Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P03
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...    44   1e-05
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    25   7.2  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = +1

Query: 70  GVDLDQLLDMPNEQLMELMHARARRRFARGLK 165
           GVDLDQLLDM  EQ  +L+  R RRR  RGLK
Sbjct: 25  GVDLDQLLDMSREQFTKLLPCRMRRRLDRGLK 56


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 159 PAREPPASARMHQFHELFIGHV 94
           P  E PA+    Q HE+++GH+
Sbjct: 186 PDWEGPATGPAGQGHEIYVGHI 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,678
Number of Sequences: 27780
Number of extensions: 40530
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)