Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P02
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   2.3  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    23   7.1  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    23   7.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    22   9.3  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    22   9.3  

>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 25  ELLYFQIFFQKPLFNFVNSREEFTTD 102
           E++Y  +F  +P F F+   +EF  D
Sbjct: 98  EVVYKDLFTHRPAFGFLTVGDEFYKD 123


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 4   TTDITYLELLYFQIFFQK 57
           TT IT+  LLY Q++ Q+
Sbjct: 259 TTTITFTPLLYAQLYQQR 276


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 9   RHYLLRATLFSDFLPKTAF 65
           +H  +  TLF D +P T+F
Sbjct: 223 KHLYIHNTLFEDAIPLTSF 241


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 37   FQIFFQKPLFNFVNSREEFTT 99
            FQ+ F + + +F  S  +FTT
Sbjct: 1578 FQVIFNESISDFSTSTADFTT 1598


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
          VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 5  LQTLLT*SYFIFRFSSKNR 61
          L  LLT SY ++RF + N+
Sbjct: 8  LNKLLTISYLLYRFPNTNQ 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,804
Number of Sequences: 5004
Number of extensions: 2789
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)