Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P01
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.12 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   0.78 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   2.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   2.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   3.1  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    23   4.1  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    23   4.1  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    23   4.1  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    23   7.2  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    23   7.2  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    22   9.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    22   9.6  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    22   9.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    22   9.6  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    22   9.6  

>SPCC1393.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 4   FGTRAQSTFESGKSYVDSAKDTVQSTLQSTVDTTKNV 114
           F      T E  KSY+ S K+ V   L    +  KNV
Sbjct: 49  FDKAVGETTEKAKSYLQSGKERVVDELDKPRENVKNV 85


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  KDTVQSTLQSTVDTTKNVAQVCSRNWK 141
           + T   +L S +DT+ + +Q+C  +W+
Sbjct: 57  EQTNNGSLSSLIDTSYSNSQICYSSWQ 83


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  RYGTKHASKYSRHH 104
           RY   HAS+Y+ HH
Sbjct: 369 RYNKLHASEYNHHH 382


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 19   QSTFESGKSYVDSAKDTVQSTLQSTVDTTKNVA 117
            +S FE   SY+  A+D + + L + V  + N A
Sbjct: 1404 RSQFEEAASYITRARDLLDTELTALVGESYNRA 1436


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  CTLKRALYRIFSRIDVTFPTFKSTLGPRAE 4
           CT+   L  I S + + F TF+ TL   A+
Sbjct: 269 CTISAVLLLIVSSVCIPFWTFERTLAKLAK 298


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  CTLKRALYRIFSRIDVTFPTFKSTLGPRAE 4
           CT+   L  I S + + F TF+ TL   A+
Sbjct: 198 CTISAVLLLIVSSVCIPFWTFERTLAKLAK 227


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  CTLKRALYRIFSRIDVTFPTFKSTLGPRAE 4
           CT+   L  I S + + F TF+ TL   A+
Sbjct: 236 CTISAVLLLIVSSVCIPFWTFERTLAKLAK 265


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  AQSTFESGKSYVDSAKDT 69
           +QS  +S K Y DSAK T
Sbjct: 72  SQSDKDSSKKYSDSAKST 89


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 109 FLWCLLYFEACFVPYL*QNRRNFSHFQ 29
           F+ C+   EAC++PY+ Q R    +F+
Sbjct: 553 FMNCMA--EACYMPYIFQCRAKQDNFK 577


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 42  FPTFKSTLGPRA 7
           FP FKST G RA
Sbjct: 289 FPYFKSTFGERA 300


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 139 SSFYCRLVLHFLWCLLYFEA 80
           +SFY    LHFLW   +F A
Sbjct: 339 ASFYS---LHFLWLCTFFHA 355


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 41  FPLSKVLWALVP 6
           FPL   LW LVP
Sbjct: 174 FPLKMALWKLVP 185


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 61   KDTVQSTLQSTVDTTKNVAQVCSRNWKKL 147
            +D +QS  ++T +  KN+  + S   +KL
Sbjct: 1356 QDIIQSMTEATFEIEKNIQDLKSEEVQKL 1384


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 123 DLCYIFCGVYCTLKRALYRI 64
           + CY+ C +   LK   YRI
Sbjct: 916 ETCYMICSIERLLKVIFYRI 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.118    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,166
Number of Sequences: 5004
Number of extensions: 8399
Number of successful extensions: 22
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)