Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_P01
(149 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 28 0.90
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110 27 1.6
05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824 26 4.8
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 25 6.3
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 25 6.3
07_01_0225 - 1650665-1652743 25 6.3
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 25 6.3
05_05_0154 - 22774503-22774652,22774738-22774968,22775508-227756... 25 8.4
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 25 8.4
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 120 LCYIFCGVYCTLKRALYRIFSRIDVTFPTFKSTL 19
+C+I G +C +Y + DVTFP +L
Sbjct: 57 ICFILQGCFCVDLGCIYILLQIFDVTFPALPCSL 90
>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
Length = 97
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 45 LRRFC*RYGTKHASKYSRHHKKCSTSL 125
L R C RY T + S+Y+ HH + +L
Sbjct: 10 LARSCRRYSTCYGSRYASHHLPANRAL 36
>05_06_0256 + 26720919-26720978,26721071-26721457,26721669-26721824
Length = 200
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 7 GTRAQSTFESGKSYVDSAKDTVQSTLQSTVD 99
G+ Q E KS V AKD V STL T D
Sbjct: 144 GSVLQQASEQVKSTVVGAKDAVMSTLGMTED 174
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 4 FGTRAQSTFESGKSYVDSAKDTVQSTL 84
+ T T ESGK + + +DT +S L
Sbjct: 326 YKTELNLTLESGKGFAAAVRDTTESNL 352
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 117 CYIFCGVYCTLKRALYRIFSRIDVTFP 37
C + C +C L Y I R VTFP
Sbjct: 270 CILICRDHCLLSHIRYAIRLRKKVTFP 296
>07_01_0225 - 1650665-1652743
Length = 692
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 138 PVSTADLCYIFCGVYCTLKRALYR 67
P+++A +FCGV+ T+ R R
Sbjct: 317 PIASATFVILFCGVFITIVRRRLR 340
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 148 ITFSSFYCRLVLHFLWCLLYFEACF 74
I++S +L+L LWCL++ F
Sbjct: 3 ISYSPMILKLILGLLWCLVHLVISF 27
>05_05_0154 -
22774503-22774652,22774738-22774968,22775508-22775675,
22775760-22775936,22776281-22776302,22776351-22776417,
22776583-22776774,22776819-22776962,22778421-22779102
Length = 610
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 52 DSAKDTVQSTLQSTVDTTKNVAQVCSRNW 138
D+AKD V+ LQ QV RNW
Sbjct: 315 DNAKDLVRQMLQPDPKLRLTAKQVLVRNW 343
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 40 KSYVDSAKDTVQSTLQSTVDTTKNVAQVCSR 132
K V+ +D + S ++ +DT +NV C R
Sbjct: 402 KEVVELFQDMLHSEVEPDIDTCENVMVACGR 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.118 0.326
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,721,401
Number of Sequences: 37544
Number of extensions: 45177
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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