Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P01
         (149 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    28   1.0  
Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical p...    25   5.5  
Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z29117-8|CAA82380.1|  196|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 142 FSSFYCRLVLHFL-WC 98
           F  F+CR VLHFL WC
Sbjct: 262 FKLFWCRSVLHFLQWC 277


>Z83113-10|CAI46598.1|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 31  ESGKSYVDSAKDTVQSTLQSTVDTTKNV 114
           +S K YV+ AKD       S  D T +V
Sbjct: 105 DSAKDYVEDAKDKASDVWDSAKDKTSDV 132


>Z83113-9|CAB05548.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 31  ESGKSYVDSAKDTVQSTLQSTVDTTKNV 114
           +S K YV+ AKD       S  D T +V
Sbjct: 105 DSAKDYVEDAKDKASDVWDSAKDKTSDV 132


>Z73975-5|CAA98278.2|  556|Caenorhabditis elegans Hypothetical
           protein K08H10.2b protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 31  ESGKSYVDSAKDTVQSTLQSTVDTTKNV 114
           +S K YV+ AKD       S  D T +V
Sbjct: 105 DSAKDYVEDAKDKASDVWDSAKDKTSDV 132


>Z73975-4|CAA98279.2|  497|Caenorhabditis elegans Hypothetical
           protein K08H10.2a protein.
          Length = 497

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 31  ESGKSYVDSAKDTVQSTLQSTVDTTKNV 114
           +S K YV+ AKD       S  D T +V
Sbjct: 105 DSAKDYVEDAKDKASDVWDSAKDKTSDV 132


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 109 FLWCLLYFEACFVPY 65
           F+W LL+   CFV Y
Sbjct: 21  FIWILLFLAVCFVAY 35


>Z29117-8|CAA82380.1|  196|Caenorhabditis elegans Hypothetical
           protein C48B4.8 protein.
          Length = 196

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 130 YCRLVLHFLWCLLY--FEACFVP 68
           +  + +HF++CLLY  F   F+P
Sbjct: 80  FALIYIHFIYCLLYIVFSFLFIP 102


>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 135 VSTADLCYIFCGVYCTLKRALYRIF 61
           V T  LC +F  +Y T + A YR+F
Sbjct: 167 VITLMLCMMFWTLYSTWQFAFYRVF 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.309    0.118    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,660
Number of Sequences: 27780
Number of extensions: 46485
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 30
effective length of database: 11,906,798
effective search space used: 226229162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)