Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_P01
         (149 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   1.8  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    20   2.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    18   9.4  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  TLQSTVDTTKNVAQVCSR 132
           T++    T KN+ +VCS+
Sbjct: 28  TIEEAKKTIKNLRKVCSK 45


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  TLQSTVDTTKNVAQVCSR 132
           T++    T KN+ +VCS+
Sbjct: 2   TIEELKKTIKNLRKVCSK 19


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = -3

Query: 117 CYIFCGVYCTL 85
           C +  G+YC L
Sbjct: 205 CIVMLGIYCRL 215


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 78  ALYRIFSRIDVTFPTF 31
           A+Y+ F  IDV +  F
Sbjct: 139 AIYKSFCEIDVEYFPF 154


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 115 LHFLWCLLYFEACFVPYL 62
           LH+L  LLY    F+  L
Sbjct: 47  LHYLLALLYILFTFLALL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.118    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,600
Number of Sequences: 438
Number of extensions: 559
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)