Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O24
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 134 6e-33
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 62 3e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 7e-10
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 56 3e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 53 1e-08
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 52 3e-08
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 52 4e-08
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 51 6e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 49 3e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 1e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 46 2e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 7e-06
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 43 2e-05
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 1e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 2e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 39 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 3e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 38 6e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 38 6e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 8e-04
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.004
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 35 0.006
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 33 0.013
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.017
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.017
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.029
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.090
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.27
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 29 0.27
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.36
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 28 0.48
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 27 0.84
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 1.1
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 27 1.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.1
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 27 1.5
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 1.5
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 1.9
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 1.9
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 1.9
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 1.9
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 1.9
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.6
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 2.6
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 2.6
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 26 2.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 4.5
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 4.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 4.5
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 25 4.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 25 5.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.9
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 24 7.8
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 24 7.8
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 134 bits (323), Expect = 6e-33
Identities = 64/132 (48%), Positives = 91/132 (68%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 187
+GYGFVHF++ E+AN +IE VNGMLLN KKVYVG + R+ER+ ++ FTNVY+KN
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKN 267
Query: 188 FGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELNGKELV 367
+ +++ D+F ++G ITS ++ + RGFGFV + + + A++A ELN KE
Sbjct: 268 LDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKE-Y 326
Query: 368 EGKPLYVGRAQK 403
+GK LYVGRAQK
Sbjct: 327 KGKKLYVGRAQK 338
Score = 107 bits (257), Expect = 6e-25
Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 10/141 (7%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELG---EKAKLF----- 166
G+GFV++ E A K+++++N GKK+YVGR + ERE+EL E+ KL
Sbjct: 302 GFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKY 361
Query: 167 --TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERAC 340
N+++KN ++ DE LK F +G ITS K+M + G S+GFGFV + P+ A +A
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAV 421
Query: 341 MELNGKELVEGKPLYVGRAQK 403
E+N + ++ GKPLYV AQ+
Sbjct: 422 TEMN-QRMLAGKPLYVALAQR 441
Score = 66.1 bits (154), Expect = 2e-12
Identities = 38/127 (29%), Positives = 68/127 (53%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 190
GY +V+F E K+++++N L+ G+ + + R +++G NV++KN
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRI-MWSQRDPSLRKMGTG-----NVFIKNL 175
Query: 191 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELNGKELVE 370
++ L D F +G+I S KV + G ++G+GFV F+ ++A A +NG L+
Sbjct: 176 DPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM-LLN 234
Query: 371 GKPLYVG 391
K +YVG
Sbjct: 235 DKKVYVG 241
Score = 38.3 bits (85), Expect = 4e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 145
+G+GFV + T E ANK++ ++N +L GK +YV ++ R +L
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQL 449
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 62.1 bits (144), Expect = 3e-11
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 190
G+GF+ F+ + N+ + K + L+GK + R IPR+E+EK AK+F V
Sbjct: 205 GFGFLTFKNPKCVNEVMSKEHH--LDGKIIDPKRAIPREEQEKT----AKMF----VGGV 254
Query: 191 GEDFSDEMLKDMFEKYGRITSHKVMY-KDDGISRGFGFVAFEDPDAAERACMELNGKELV 367
D ++E ++ F ++GR+ +M KD G RGFGFV +E+ A E A M +
Sbjct: 255 PGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE-ATMS-QPYITI 312
Query: 368 EGKPLYVGRA 397
GKP+ V RA
Sbjct: 313 HGKPVEVKRA 322
Score = 38.7 bits (86), Expect = 3e-04
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GISRGFGFVAFEDP 319
+++ + +D+ L+D FE++G + VM G SRGFGF+ F++P
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 57.6 bits (133), Expect = 7e-10
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELN 352
++V N G D +DE L F +Y + KV+ +G +RGFGFV+F+D D +A E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 353 GKELVEGKPLYVGRA 397
GK + +P+ + RA
Sbjct: 92 GK-YIGSRPVKLSRA 105
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 55.6 bits (128), Expect = 3e-09
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGE-KAKLFT------ 169
GYGFV F E A ++ +++ L+G+ + + PRK E + + KA T
Sbjct: 47 GYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNR 106
Query: 170 -NVYVKNFGEDFSD-EMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACM 343
+ ++N + L+ F K+G++ K+ K G GF FV +D AAE A
Sbjct: 107 PRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 344 ELNGKELVEGKPLYV 388
LNG E ++G+P+ V
Sbjct: 167 SLNGTE-IDGRPIAV 180
Score = 36.7 bits (81), Expect = 0.001
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GISRGFGFVAFEDPDAAERACM 343
+ ++V+N + L + F G I V+ + G +RG+GFV F + A+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 344 ELNGKEL 364
EL K+L
Sbjct: 65 ELKNKKL 71
Score = 26.6 bits (56), Expect = 1.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 278 GISRGFGFVAFEDPDAAERACMELNGKELVEGK 376
G S+GFGF+ F A A LNG+E+ K
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKK 568
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 53.2 bits (122), Expect = 1e-08
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR--------KEREKELGEK-AK 160
+GYG+V FET EAA ++ ++G+ V + PR ++R G++ ++
Sbjct: 304 KGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSE 363
Query: 161 LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGISRGFGFVAFEDPDAAERA 337
V+V N + +++ L F G I S ++ G +GFG+V F D D+A++
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK- 422
Query: 338 CMELNGKELVEGKP 379
C+E+NG + G+P
Sbjct: 423 CVEMNG-HFIAGRP 435
Score = 46.8 bits (106), Expect = 1e-06
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGISRGFGFVAFEDPDAAERACMEL 349
V+V + D+ L FE+YG I +V M G S+G+G+V FE P+AA +A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA-KAAVAA 323
Query: 350 NGKELVEGK 376
NG + ++G+
Sbjct: 324 NGTKEIDGR 332
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 52.0 bits (119), Expect = 3e-08
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +2
Query: 167 TNVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGISRGFGFVAFEDPDAAERA 337
+N+YVKN + L+D+F +G I S + Y + GIS+G+GFVAF +AA RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 338 CMELNGKELVEGKPLYVGRAQK 403
LNG +V K ++V A++
Sbjct: 442 KDTLNGM-MVGKKRIFVCFAER 462
Score = 35.1 bits (77), Expect = 0.004
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
+GYGFV F EAA ++ + +NGM++ K+++V
Sbjct: 425 KGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFV 457
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITS 253
+ +YV N SDE + F KYG++ S
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 51.6 bits (118), Expect = 4e-08
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNF 190
G+GF F E+ + + +N + L GK + V R ++ G + N++V N
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNR------ASQDRGVNTLIGANLFVGNL 106
Query: 191 GEDFSDEMLKDMFEKYGRITSHKVMYKDD-GISRGFGFVAFEDPDAAERACMELNGKELV 367
+ +L D F G++ + +D+ G S+G+GFV+++ + A+ A +N + L+
Sbjct: 107 DPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLM 166
Query: 368 EGKPLYVGRAQK 403
KP+ V A K
Sbjct: 167 -NKPITVSYAFK 177
Score = 34.3 bits (75), Expect = 0.007
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAK 160
+GYGFV +++ E A+ +IE +N L K + V R+ + + G+ A+
Sbjct: 140 KGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAE 190
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 51.2 bits (117), Expect = 6e-08
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Frame = +2
Query: 170 NVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGISRGFGFVAFEDPDAAERAC 340
N++VKN ++ + + L+++F K+GRI S + Y IS+G+GFV+F P A +A
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 341 MELNGKELVEGKPLYVGRAQK 403
LNG L K L+V A+K
Sbjct: 480 NTLNG-VLFGKKRLFVNYAEK 499
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKEL 145
+GYGFV F A ++I +NG+L K+++V R++R+K L
Sbjct: 462 KGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRL 507
Score = 32.3 bits (70), Expect = 0.029
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +2
Query: 125 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRG---- 292
K EK K ++YV N L ++FE +G + ++ + S
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 293 --FGFVAFEDPDAAERACMELNGKELVEGKPLYV 388
F F+ FE+ +A+ A LNG +G L V
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSF-QGNTLKV 98
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.8 bits (111), Expect = 3e-07
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKERE-KELGEKAKL------F 166
+G +V F E++ +I ++G L G V V K R+ +E E A+ F
Sbjct: 281 KGVAYVEFCHEDSVQAAIA-LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF 339
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACME 346
+ V N + +DE +K +FE +G I + D S+GFG++ + +P +A A +
Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEK 399
Query: 347 LNGKEL 364
+NG +L
Sbjct: 400 MNGFDL 405
Score = 39.1 bits (87), Expect = 3e-04
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 125 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGISRGFGF 301
+ER +L E+ + V+V + L D FE+ G + +++ K G S+G +
Sbjct: 226 RERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAY 285
Query: 302 VAFEDPDAAERACMELNGKELVEGKPLYV 388
V F D+ + A + L+GK L+ G P+ V
Sbjct: 286 VEFCHEDSVQ-AAIALSGKRLL-GLPVIV 312
Score = 28.7 bits (61), Expect = 0.36
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
+G+G++ + +A ++EK+NG L G+ + V
Sbjct: 380 KGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 1e-06
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGR----FIPRKEREKELGEKAKLFTNVY 178
G+GFV F+ + +A ++ +NG +L+G K+ + E K+ K K T +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK-GTKIL 724
Query: 179 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELNGK 358
+KN + + + ++ + YG++ S +V K D +RGF F F A A L
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNT 784
Query: 359 ELV 367
L+
Sbjct: 785 HLL 787
Score = 41.1 bits (92), Expect = 6e-05
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Frame = +2
Query: 116 IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGISRG 292
+ +ER +L + K ++++N +++ LK +F +G++ H + K +G
Sbjct: 309 VSEQERNIQLISETK---RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKG 365
Query: 293 FGFVAFEDPDAAERACMELNGKELVEGKPLYV 388
F ++ F D D A RA +EL+ K +G+ L+V
Sbjct: 366 FAYIDFHDADDAVRAYLELDAKPF-QGRLLHV 396
Score = 35.1 bits (77), Expect = 0.004
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEML----KDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAER 334
+ + +KN + E L K + + IT V +G+SR F F+ F++ + A++
Sbjct: 2 SRIIIKNIPRYYDKEKLSTYLKSLPQLDAEITDVSVAKTKEGVSRRFAFIGFKNEEDADK 61
Query: 335 ACMELNGKELVEGKPLYVGRA 397
A LN K VE + V RA
Sbjct: 62 AIRYLN-KSYVETSRIEVHRA 81
Score = 31.5 bits (68), Expect = 0.051
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDG------ISRGFGFVAFEDPDAAER 334
+YVKN E + +F+ S + K D +S GFGFV F+D +A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 335 ACMELNG 355
A +NG
Sbjct: 681 AMHAMNG 687
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.4 bits (105), Expect = 2e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELN 352
+YV N SD L D+F G + ++ Y+ G S+GFG V FE+ + A + +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 353 GKELVEGKPLYVGRA 397
G G+PL + A
Sbjct: 342 GYR-YGGRPLQLSYA 355
Score = 32.3 bits (70), Expect = 0.029
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGK 94
+G+G V FE E A SIEK+NG G+
Sbjct: 320 KGFGVVQFENENDAASSIEKLNGYRYGGR 348
Score = 30.7 bits (66), Expect = 0.090
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 128 EREKELGEKAKLFTN---VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFG 298
ER+ LG K VYV N LK+ + G + + +++ +G+S+G
Sbjct: 50 ERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCA 109
Query: 299 FVAFEDPDAAERACMELNGKELVEGKPLYV 388
+ + + A A L+ ++ + G+ +Y+
Sbjct: 110 IIEYSTAEEARTAIKTLSNQKFM-GRLVYI 138
Score = 30.3 bits (65), Expect = 0.12
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 215 LKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 388
LKD+F + G + + +G SRG G V A A L+ + + G+ L V
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM-GRTLEV 255
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 7e-06
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +2
Query: 116 IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGISRG 292
+ +KE + L +++V ++ L+ +F K+G +T ++M + SRG
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 293 FGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQK 403
FGF++F + A A LN +E G+ L V +A++
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFY-GRVLNVQKAKR 179
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 43.2 bits (97), Expect = 2e-05
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGR---FIPRKEREKE-LGEKAKLFTN- 172
+G+ +V F TE+A +++ + LNG+ + + F R + L + A + ++
Sbjct: 165 KGFAYVDFATEDALKLALQ-CSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSK 223
Query: 173 ------VYVKNFGEDFSDEMLKDMFEKYGRITSHKVM-YKDDGISRGFGFVAFEDPDAAE 331
++V N + +D LK+ F + G+I ++M ++D G +GFGFV F D D
Sbjct: 224 KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCM 283
Query: 332 RACMEL 349
+A MEL
Sbjct: 284 KA-MEL 288
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.9 bits (89), Expect = 1e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGISRGFGFVAFEDPDAAERACMEL 349
VYV N + ++E + D+F++ G + S + V+ + G +G+GF + DP A A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 350 N 352
N
Sbjct: 67 N 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGISRGFGFVAFEDPDAAERACMEL 349
+Y+ N + ++ + ++ + +G + S +++ DG S+GF F F++P AE A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 350 NGKELVEGK 376
+GK+ K
Sbjct: 372 DGKDTYGNK 380
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.1 bits (87), Expect = 3e-04
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +2
Query: 131 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAF 310
R E+ + + TN+YV NF + + + +F YG + + +R F +V
Sbjct: 654 RGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQM 713
Query: 311 EDPDAAERACMELNGKELVEGKPLYV 388
PD A A ++L+ K L E P+ V
Sbjct: 714 RKPDEAHNA-LQLHKKLLEEKYPIQV 738
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 3e-04
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Frame = +2
Query: 14 YGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPR--------------------KER 133
YGFV F +E+ ++ + G L G+ + + P+ ++
Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQP 285
Query: 134 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFE 313
++L L T V+V + S++ L+ F+ +GRI + K+ + +G GFV +
Sbjct: 286 NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF-----GKGCGFVQYS 340
Query: 314 DPDAAERACMELNG 355
+ AAE+A + G
Sbjct: 341 EKSAAEKAINTMQG 354
Score = 33.1 bits (72), Expect = 0.017
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Frame = +2
Query: 14 YGFVHFETEEAANKSIEKVNGMLLNGKKVY--VGRFIPRKEREKELGEKAKLFTNVYVKN 187
Y FV F + AA +++ K N ++ G + + + F+ ++V +
Sbjct: 130 YCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFS-IFVGD 188
Query: 188 FGEDFSDEMLKDMFEK-YGRITSHKVMYKD-DGISRGFGFVAFEDPDAAERACMELNGKE 361
D L F Y TS K++ G+SR +GFV F + A M + G
Sbjct: 189 LLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG-Y 247
Query: 362 LVEGKPLYVGRA 397
L +G+PL + A
Sbjct: 248 LCQGRPLRISVA 259
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.1 bits (87), Expect = 3e-04
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKE-REKELGEKAKLFTNVYVKN 187
GY FV F + A+ ++ N + ++ + REK + + ++ +++V +
Sbjct: 135 GYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEY--SIFVGD 192
Query: 188 FGEDFSDEMLKDMF-EKYGRITSHKVMYKDD-GISRGFGFVAFEDPDAAERACMELNGKE 361
+ ++ + +F +Y S K+M +SRG+GFV F D + + A E+ G +
Sbjct: 193 LSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG-Q 251
Query: 362 LVEGKPLYVGRA 397
+ +P+ VG A
Sbjct: 252 ICGDRPIRVGLA 263
Score = 31.9 bits (69), Expect = 0.039
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 22/140 (15%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKERE-----------------K 139
GYGFV F E ++ ++ G + + + VG P+ +
Sbjct: 229 GYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFY 288
Query: 140 ELGEKAKLF-----TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFV 304
+ F + V+V + S+E LK +F+ +G I K+ +G GFV
Sbjct: 289 SAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI-----PPGKGCGFV 343
Query: 305 AFEDPDAAERACMELNGKEL 364
F + +AE A +L G L
Sbjct: 344 QFVNRQSAEIAINQLQGYPL 363
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 37.9 bits (84), Expect = 6e-04
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 86 NGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVM 265
N ++ G E GE + T + VKN + L D F++ G +
Sbjct: 176 NSTQIKAGSTANSNSTPVEPGEDT-IPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFN 234
Query: 266 YK-DDGISRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 388
Y D+GI RG F F P+ A+ LNG E + G+ L V
Sbjct: 235 YHYDNGIFRGLAFANFYRPEEAQVVVQTLNGYE-INGRRLRV 275
Score = 32.3 bits (70), Expect = 0.029
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV--GRFIPRKEREKELGEKAK 160
G F +F E A ++ +NG +NG+++ V R +P EREK EKAK
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKV--EKAK 293
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.9 bits (84), Expect = 6e-04
Identities = 31/115 (26%), Positives = 52/115 (45%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 187
+GYGF FE E++A + ++ M L G Y F + + TN+Y+ N
Sbjct: 337 KGYGFACFEEEKSA---LICISAMTLCG---YQCSFAKESFSARLQSLQDTESTNLYISN 390
Query: 188 FGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELN 352
+++ + +F K +I S++V+ SRG GF +D AE + N
Sbjct: 391 LPLHWNESDISTLF-KPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFN 444
Score = 37.5 bits (83), Expect = 8e-04
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 128 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGISRGFGFV 304
+ +K E NVY++ + SDE L ++G+++S K ++ + + +G+GF
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
Query: 305 AFEDPDAA 328
FE+ +A
Sbjct: 343 CFEEEKSA 350
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 37.5 bits (83), Expect = 8e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELN 352
+++KN + E + D+F +YG + ++ + +RG FV +E+ A RAC +L+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV--RQIRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 353 GKELVE 370
G ++
Sbjct: 72 GYNFMD 77
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.1 bits (77), Expect = 0.004
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELN 352
+YV F + L FE +G + + SR F FV +ED AE A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 353 GKELVEG 373
G+ L G
Sbjct: 69 GRRLERG 75
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.7 bits (76), Expect = 0.006
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Frame = +2
Query: 170 NVYVKNFGEDFSDEMLKDMFEKYG----RITSHKV---------MYKDDGISRGFGFVAF 310
++YV ++E LK+MF+ Y RI + + + RGFGFV+F
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 311 EDPDAAERACMELNGKEL 364
+ + RA E+NGK++
Sbjct: 266 ANAEDQSRAIEEMNGKQV 283
Score = 32.3 bits (70), Expect = 0.029
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK 154
G+GFV F E +++IE++NG + + V + R++++ + EK
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEK 306
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.5 bits (73), Expect = 0.013
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGISRGFGFVAFEDPDAAERACM 343
T + +KN E+L +F + Y D+G+ RG F F P+ A+
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 344 ELNGKELVEGKPLYV 388
LNG E + G+ L V
Sbjct: 292 VLNGYE-ITGRRLRV 305
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.1 bits (72), Expect = 0.017
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 173 VYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGISRGFGFVAFEDPDAAERACMEL 349
+Y+ N D +++ + +F ++G + + V K+ G S+GF F+ +ED + A +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 350 NGKELVE 370
+L++
Sbjct: 93 TNVKLLD 99
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.017
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +2
Query: 176 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACMELNG 355
+V N D ++ L D F + G + V+ SRGFG+V FE D A + L+G
Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLS-AALALSG 154
Query: 356 KELVEGKPLYVGRAQ 400
++L+ G+P+ + A+
Sbjct: 155 EDLM-GRPVRITVAE 168
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKE 142
G+G+V FET + + ++ ++G L G+ V + PR+ +E
Sbjct: 134 GFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAEPRRSFARE 176
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.3 bits (70), Expect = 0.029
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERACME 346
T ++V + E + D F+ YG+I K+M GFGFV ED A +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVND 56
Query: 347 LNGKELV 367
GKE +
Sbjct: 57 FQGKEFM 63
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKV 100
G G V F TEE ++ +NG ++ G+ V
Sbjct: 135 GAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.090
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +2
Query: 20 FVHFETEEAANKSIEKV--NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFT--NVYVKN 187
FV F T AAN + + +LL+G+++ VG + L + + NVY +
Sbjct: 447 FVTFITYSAANAFHDYLAEEEVLLHGRRIKVGWGKESGPLPRVLEDSILMGASRNVYFSH 506
Query: 188 FGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERA 337
+ + E L+ + +YG I S K + +R GFVA+ + A +A
Sbjct: 507 ISDSLTTEELELILRQYGEIESIKYLK-----NRSSGFVAYTNISNAMKA 551
Score = 28.7 bits (61), Expect = 0.36
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 74 GMLLNGK--KVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 247
G + +G+ K+ R P E + NV++ N + ++ +++ F K+G+I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 248 TSHKVMYK 271
K++ K
Sbjct: 326 EHIKILSK 333
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 0.27
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 80 LLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY-GRITSH 256
+LNG +YV F+P K R L + L +V GE+ + K M Y G++ S
Sbjct: 313 ILNGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCPLYPGEENPFKRFKIMLTVYTGKVISV 372
Query: 257 KVMYKDD 277
+V ++
Sbjct: 373 EVQLSEN 379
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 29.1 bits (62), Expect = 0.27
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 11 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
GY FV FE E + + G++LNG+++ V
Sbjct: 142 GYAFVVFERERDLKVAYKASAGLMLNGRRIVV 173
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.36
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 212 MLKDMFEKYGRITSHKVMYKDDGISRGFGFVAFEDPDAAERA 337
+L D+F KYG++ K++++ F F+ F+ AA A
Sbjct: 381 LLVDLFSKYGKVIDCKIIHQSK--KPAFAFLRFDSQQAAYAA 420
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.48
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 167 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGISR---GFGFVAFEDPDA 325
T V +KN F+ +ML+D + + T + + D +++ G+ F+ F +P +
Sbjct: 597 TTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYAFINFIEPQS 652
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 0.84
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 171 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 52
++ L FSP S R +N+ YT F IP S++L
Sbjct: 89 MLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNL 128
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 281 ISRGFGFVAFEDPDAAERACMELNGKELVEGKPLYV 388
+S G F FE+ D A+ EL+GK++++ V
Sbjct: 89 MSLGLVFADFENVDGADLCVQELDGKQILKNHTFVV 124
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 119 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 223
P E EK++ +KAKL N + G+ ++ +D
Sbjct: 625 PSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD 659
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 170 NVYVKNFGEDFSDEMLKDMFEKYGRI 247
N+Y+ N + + E LK+ FE++G I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 101 YVGRFIPRKEREKELGEKAKLFTNVYVKNF 190
YV F+PR KEL + Y+ NF
Sbjct: 187 YVAAFLPRNTDVKELAAYGSIHNKPYITNF 216
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 1.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 338 MLFLLHQDLQKRQNQNHVKYHHP 270
+++L H D Q NH+ Y+HP
Sbjct: 133 LMYLPHLDKSLEQPYNHLPYYHP 155
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 171 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 52
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 1.9
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = -3
Query: 369 STNSLPFNSIHALSAASGSSKATKPKPREIPSSLYITL*LVMRPYFSNISFNISSEKSSP 190
S++S +S + S+ SS ++ P S++ + P ++ S ISS SS
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP--TSTSSTISSSSSSS 314
Query: 189 KFFT*TLVNNLAFSPNSFSRS 127
F+ TL ++ S +SFS S
Sbjct: 315 SSFSSTLSSSSMSSSSSFSSS 335
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 14 YGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
YGFV F T E +++ G + G+K+++
Sbjct: 399 YGFVQFFTNEDCARALNAEQGNFVRGQKLHL 429
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
+GYGF F E ++ K+N L +K+ V
Sbjct: 48 KGYGFCEFFDSETTAMAVRKLNNSELGPRKIRV 80
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 171 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 52
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 171 LVNNLAFSPNSFSRSLRGMNLPTYTFFPFSNIPLTFSIDL 52
L NL F+P S R + L Y+ F IP+ S++L
Sbjct: 92 LFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNL 131
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 2.6
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +2
Query: 8 EGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 106
+GY ++ + + A +++K+N L+G++++V
Sbjct: 140 KGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 14 YGFVHFETEEAANKSIEKVNGMLLNGK 94
Y F+ FE+ + AN E ++ LL GK
Sbjct: 148 YAFIEFESLDVANVVAETMHNYLLYGK 174
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 375 FPSTNSLPFNSIHALSAASGSSKATKPKPREIPSS 271
F +TN+ + S+ S + + AT K E PSS
Sbjct: 544 FNATNTTEYKSVSRASQSQYKATATSEKSHETPSS 578
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 47 ANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTN 172
A +S + V ++NG PR ++ ELG K +F N
Sbjct: 518 AVESGDVVKATIVNGPAAPYAEDRPRHKKNPELGNKKSIFAN 559
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 257 KVMYKDDGISRGF---GFVAFEDPDAAERACMELNGKELVEGKPL 382
KV Y +DG S + FE DAA A + + L+ G P+
Sbjct: 15 KVNYYEDGESGAILKTCCIEFESQDAARNALERQSTQRLISGNPI 59
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.0 bits (52), Expect = 4.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 17 GFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKN 187
G V TE + +N LL+ KKV F P + + ++ K FTN VKN
Sbjct: 549 GAVADTTELKEHPFFADINWDLLSKKKVQPP-FKPNVQNDLDVSNFDKEFTNTNVKN 604
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 4.5
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 41 EAANKSIEKV---NGMLLNGKKVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDE 211
+ A + IEK+ NG L N +K + + ++E L +K ++ K+F ++ DE
Sbjct: 90 KVAEEKIEKLLKENGTLKNEEKCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRKNMEDE 149
Query: 212 M 214
+
Sbjct: 150 L 150
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 396 ARPTYKGFPSTNSLPFNSIHALSA 325
ARP Y G+ ++ + ++ HALS+
Sbjct: 237 ARPAYDGYETSRQIVMDAEHALSS 260
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 249 VMRPYFSNISFNISSEKSSPKFFT*TLVNNLAFSPNSFSRSLRGMNL 109
V P+FS I + S S PK T + + P +R G+ L
Sbjct: 239 VSLPFFSKIELDEGSSFSGPKISARTSSGKIIYFPKKKNRHSDGLLL 285
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 5.9
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = -3
Query: 369 STNSLPF----NSIHALSAASGSSKATKPKPREIPSSLYITL*LVMRPYFSNISFNISSE 202
S++S+P +S H+ S++S SS ++ +P SS +IT + + S ++ SS
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSS--SSSFITT-MSSSTFISTVTVTPSSS 260
Query: 201 KSS 193
SS
Sbjct: 261 SSS 263
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 7.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 314 DPDAAERACMELNGKELVEGK 376
DPDA E + +E+N ++++E K
Sbjct: 376 DPDAFESSWLEVNPEDIMEPK 396
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 377 VFLQLIPCHSTPYMLF---LLHQDLQKRQNQNHVKYHHPCTLLC 255
V++ ++P +TP +LH+DL K + + + CT LC
Sbjct: 14 VYISVLPATATPSGGSGGNVLHEDLNKFYDYGNTSWILACTPLC 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,708
Number of Sequences: 5004
Number of extensions: 33256
Number of successful extensions: 205
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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