Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O23
         (173 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    26   4.1  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    26   4.1  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    26   4.1  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    26   4.1  

>Z70756-5|CAA94791.2|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.5 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 75  VTNVIKDGNTLTGFSNLRA 19
           + +V KDGN++T F  LRA
Sbjct: 136 IHSVFKDGNSMTDFMKLRA 154


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  LSTELKTEEYFKKKKYPKGRNSTIV 173
           L+TE+ TEE  K+K Y  GR S ++
Sbjct: 870 LATEMPTEELLKRKPY--GRTSPLI 892


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  LSTELKTEEYFKKKKYPKGRNSTIV 173
           L+TE+ TEE  K+K Y  GR S ++
Sbjct: 870 LATEMPTEELLKRKPY--GRTSPLI 892


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  LSTELKTEEYFKKKKYPKGRNSTIV 173
           L+TE+ TEE  K+K Y  GR S ++
Sbjct: 870 LATEMPTEELLKRKPY--GRTSPLI 892


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 99  LSTELKTEEYFKKKKYPKGRNSTIV 173
           L+TE+ TEE  K+K Y  GR S ++
Sbjct: 870 LATEMPTEELLKRKPY--GRTSPLI 892


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,406
Number of Sequences: 27780
Number of extensions: 36213
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)