Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O22
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 87 3e-18
01_05_0324 - 20946774-20946935,20947301-20947780 83 6e-17
01_06_0783 + 31975261-31975398,31975583-31975726 78 2e-15
02_04_0361 - 22359278-22359439,22362291-22362728 77 5e-15
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 75 1e-14
02_02_0390 - 9640749-9641312 34 0.034
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 1.7
12_01_0504 + 3999157-4000470 28 2.2
12_01_1014 - 10309444-10309905 27 2.9
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 27 3.9
05_04_0243 + 19338682-19339038,19339751-19339867,19340360-193405... 26 8.9
05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492 26 8.9
05_01_0125 - 853691-853984,854027-854659 26 8.9
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 87.4 bits (207), Expect = 3e-18
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHF 255
LK+ADM EEM+Q+A D A A EK +EKDIA +IKKEFDKN+ PTWHCIVGR+F
Sbjct: 49 LKSADMKEEMRQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRNF 103
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 83.0 bits (196), Expect = 6e-17
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Frame = +1
Query: 49 NIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKNY 219
N+K++ + V+ + ADMS MQ A CA ++ L+KF+ + +A +KKEFDK Y
Sbjct: 110 NMKEVVSVLGVK--VMAADMSPFMQLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVY 166
Query: 220 NPTWHCIVGRHFGSYVTHETRHFIYFYLGQVAILLFKS 333
PTWHCIVG +GS+VTH F+YF + ++ ++LFK+
Sbjct: 167 GPTWHCIVGTSYGSFVTHARGCFLYFSMDKIIVMLFKT 204
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 78.2 bits (184), Expect = 2e-15
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKNYNPTWHCIVGRHFGSY 264
+++ DM +MQ A+ A +AL++F++ + IAA IKKEFD + P W C+VG FG Y
Sbjct: 8 VEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASFGCY 67
Query: 265 VTHETRHFIYFYLGQVAILLFK 330
TH FIYF LG + L+FK
Sbjct: 68 FTHSKGSFIYFKLGALRFLVFK 89
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 76.6 bits (180), Expect = 5e-15
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Frame = +1
Query: 67 RCVTVRQ*LKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKNYNPTWHCI 240
R V+VR ++ ADM MQ+ AV A A+ K +A +KKEFD Y P WHCI
Sbjct: 102 RKVSVR--VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCI 159
Query: 241 VGRHFGSYVTHETRHFIYFYLGQVAILLFKS 333
VG FGSYVTH F+YF + +V +LLF++
Sbjct: 160 VGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 74.9 bits (176), Expect = 1e-14
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHFGS 261
+K+A+M EEM+Q+A D A EK +EKDI +IK EFDKN+ PTWHCIVG +FG+
Sbjct: 61 IKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGHNFGT 116
>02_02_0390 - 9640749-9641312
Length = 187
Score = 33.9 bits (74), Expect = 0.034
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -3
Query: 330 LKEQYGDLTQVEVDEVTGLVRHVRAKVAAHDAVPCRVVVLIKFLLDESRNVLFNVK 163
L+E+ G+ + EVDE V A+V AH A+P V L++ L + N N K
Sbjct: 15 LEEEEGEALEGEVDEGAAGVGEEAAEVCAHHALPPHPVPLVELLQHQQTNNKSNPK 70
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 157 EKFNIEKDIAA-FIKKEFDKNYNPTW 231
+KFN ++ A ++K F KNY+P W
Sbjct: 594 DKFNTDEGAALNVVEKRFRKNYHPAW 619
>12_01_0504 + 3999157-4000470
Length = 437
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -2
Query: 178 PFQC*ISLGL---VSHNPLHPAASPHSCQH 98
PF +SL +SH LHP A+PH+ +H
Sbjct: 60 PFSVSLSLAAPPAISHVHLHPMAAPHTLKH 89
>12_01_1014 - 10309444-10309905
Length = 153
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 212 LSNSFLMKAAMSFSMLNFSRACVAQSTASCCISSLM 105
L+ +M+ +M +FSR C Q T C+++L+
Sbjct: 110 LTGELFWSLSMAVAMFSFSRVCRLQRTPLHCLNTLL 145
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 94 KNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYN 222
+N + EE Q +DC + E+F+ E+D IK +K N
Sbjct: 590 ENCKLREEQIQRIIDCQVKDAEEFDAEQD--ELIKTHEEKKAN 630
>05_04_0243 +
19338682-19339038,19339751-19339867,19340360-19340596,
19340926-19341078,19341188-19341263,19341600-19341626,
19342188-19342252,19342830-19342904,19343306-19343449,
19343550-19343600
Length = 433
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 182 MSFSMLNFSRACVAQSTASCCISSLMSAFLSYCLTVT 72
M L F+R ++ ++ S C+S + S CLT T
Sbjct: 213 MKLGPLQFTRKGLSVASTSACLSFAIFQSASLCLTTT 249
>05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492
Length = 283
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 219 QPDMALHRGPPLWLVRDARDPSLHLLLPGSGRH 317
Q D A H PP W + R S LL G+GR+
Sbjct: 92 QRDAAHHPTPPPWAWQAFRRRSSSLLRNGTGRY 124
>05_01_0125 - 853691-853984,854027-854659
Length = 308
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 252 LWLVRDARDPSLHLLLPGSGRHTAL 326
L LV D R+P HLL +G H L
Sbjct: 134 LTLVSDGREPRYHLLNLSTGDHVTL 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,385,543
Number of Sequences: 37544
Number of extensions: 151005
Number of successful extensions: 425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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