Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O22
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 169 6e-43
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 89 6e-19
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 77 4e-15
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 61 2e-10
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 61 2e-10
AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine re... 30 0.38
U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine rece... 28 2.0
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 27 2.7
AL032658-3|CAA21745.1| 152|Caenorhabditis elegans Hypothetical ... 27 2.7
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 27 3.5
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 27 3.5
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 27 3.5
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 27 3.5
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 27 4.7
AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical ... 27 4.7
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 26 6.1
U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine rec... 26 8.1
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 26 8.1
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 26 8.1
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 169 bits (410), Expect = 6e-43
Identities = 73/82 (89%), Positives = 81/82 (98%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHFGSYVT 270
+KNADMS++MQQDA+DCATQALEK+NIEKDIAA+IKKEFDK YNPTWHCIVGR+FGSYVT
Sbjct: 8 IKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 67
Query: 271 HETRHFIYFYLGQVAILLFKSG 336
HET+HFIYFYLGQVAILLFKSG
Sbjct: 68 HETKHFIYFYLGQVAILLFKSG 89
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 89.4 bits (212), Expect = 6e-19
Identities = 38/100 (38%), Positives = 62/100 (62%)
Frame = +1
Query: 34 LYF*SNIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDK 213
L F ++ +C + ++++ M M+Q+A A +++ +++E DIA +K FD+
Sbjct: 41 LRFELECRRTGKCREIVADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDR 100
Query: 214 NYNPTWHCIVGRHFGSYVTHETRHFIYFYLGQVAILLFKS 333
Y P WHCI G+HFGS+VT E FIYF +G +A +LFK+
Sbjct: 101 EYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKT 140
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 76.6 bits (180), Expect = 4e-15
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHFGSYVT 270
+K DM + + + +A +NI+KD+AAF+K+E DK + TWH I G+ FGS V+
Sbjct: 8 VKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVS 67
Query: 271 HETRHFIYFYLGQVAILLFKSG 336
+E HFI +V ++++K G
Sbjct: 68 YEMGHFILLKCNKVNVMIYKCG 89
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/80 (31%), Positives = 52/80 (65%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHFGSYVT 270
+++ ++ E +++ AL+ IE +IA+F+K++FD Y W C+VGR+FGS++
Sbjct: 52 IQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL- 110
Query: 271 HETRHFIYFYLGQVAILLFK 330
+ FI+F + +++++LF+
Sbjct: 111 -DPIQFIHFTVSKISVILFR 129
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/80 (31%), Positives = 52/80 (65%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKNYNPTWHCIVGRHFGSYVT 270
+++ ++ E +++ AL+ IE +IA+F+K++FD Y W C+VGR+FGS++
Sbjct: 34 IQDTNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL- 92
Query: 271 HETRHFIYFYLGQVAILLFK 330
+ FI+F + +++++LF+
Sbjct: 93 -DPIQFIHFTVSKISVILFR 111
>AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine
receptor, class w protein137 protein.
Length = 371
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 194 MKAAMSFSMLNFSRACVAQSTASCCISSLMSAFLSYCLTVTHLVNCLILLQK 39
MK+ MS+ NFS A + C + MS+ Y + +V+C L QK
Sbjct: 301 MKSIMSYFYYNFSLLLSANTATHCIVCFFMSS--QYRIAAKQVVSCGYLTQK 350
>U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine
receptor, class w protein138 protein.
Length = 369
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 194 MKAAMSFSMLNFSRACVAQSTASCCISSLMSAFLSYCLTVTHLVNC 57
MK MS+ NFS A + C + MS+ Y + +V+C
Sbjct: 301 MKTIMSYFFFNFSMLLSANTATHCIVCFFMSS--QYRIAAKQVVSC 344
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1
Query: 239 MQCHVGL*FLSNSFLMKAAMSFSMLNFSRA---CVAQSTASCCISSLMSAFLSYCLTV 75
M+C + F+ + M + F++ SR C +S++SCC SS + SYC+ V
Sbjct: 1 MRCSIMWTFVLLAIPMVTSELFALTPVSRVRRQCCGRSSSSCCSSSSSN---SYCIPV 55
>AL032658-3|CAA21745.1| 152|Caenorhabditis elegans Hypothetical
protein Y76A2B.4 protein.
Length = 152
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 254 KWRPTMQCHVGL*F--LSNSFLMKAAMSFSMLNFSRACVAQSTASCCISSLMSAFLSYCL 81
K PT + L F L SF + ++ ++LNF A +AQ+ ++ I ++ L+ C+
Sbjct: 38 KTLPTFTTQIVLIFCVLPISFSIAIFLATAILNFGVAFIAQTISTLLILLILIPTLAVCI 97
Query: 80 T 78
T
Sbjct: 98 T 98
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 46 SNIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQALEK 162
+ + +L R RQ +NA++ + Q+D +D Q L +
Sbjct: 633 ARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSE 671
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 46 SNIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQALEK 162
+ + +L R RQ +NA++ + Q+D +D Q L +
Sbjct: 633 ARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSE 671
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 46 SNIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQALEK 162
+ + +L R RQ +NA++ + Q+D +D Q L +
Sbjct: 633 ARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSE 671
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 46 SNIKQLTRCVTVRQ*LKNADMSEEMQQDAVDCATQALEK 162
+ + +L R RQ +NA++ + Q+D +D Q L +
Sbjct: 633 ARLNELQRAAAARQAQRNAELDRQRQRDELDRKAQELSE 671
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 160 KFNIEK-DIAAFIKKEFDKNYNPTWHCIVGRHFGSYVTHETR--HFIYFYLGQVAIL 321
KFN ++ ++ + K + +++P C+ G YV H R + Y G+ A++
Sbjct: 369 KFNDKQFEVVKILIKLLESSHDPLILCVASHDIGEYVRHYPRGKTVVEQYQGKAAVM 425
>AL161711-1|CAE17960.1| 134|Caenorhabditis elegans Hypothetical
protein Y10G11A.3 protein.
Length = 134
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +1
Query: 91 LKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFD 210
++ ++ E +++ AL+ IE +IA+F+K++FD
Sbjct: 51 IQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFD 90
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 106 MSEEMQQDAVDCATQALEKFNIEKDIA 186
+ EE+QQ + ++ L+K IEKD A
Sbjct: 492 VKEELQQAELKSTSEMLQKLEIEKDTA 518
>U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine
receptor, class w protein136 protein.
Length = 378
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 80 TVTHLVNCLILLQKYRK 30
T THLV CL++ +YRK
Sbjct: 323 TSTHLVLCLLMSSQYRK 339
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 130 AVDCATQALEKFNIEKDIAAFIK 198
A D TQ L+ +EKD+AAF++
Sbjct: 444 AFDNFTQTLDLDQLEKDVAAFVE 466
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 187 AFIKKEFDKNYNPTWHCIVG 246
A I + +D+NY PT H I+G
Sbjct: 213 AKIYRNYDQNYKPTQHGILG 232
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,167,305
Number of Sequences: 27780
Number of extensions: 129287
Number of successful extensions: 431
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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