Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O22
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.1  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   4.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   4.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    20   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 PPLWLVRDARDPSLHLLL 299
           P  WLV    +PSLH LL
Sbjct: 34  PEHWLVYPEPNPSLHYLL 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 145 SHNPLHPAASPHSCQHS*VTALRSHILS 62
           S NP     SP S  H     L+ HILS
Sbjct: 57  SQNPSQMMISPASGIHQMQQLLQQHILS 84


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -2

Query: 151 LVSHNPLHPAASPHSCQH 98
           L  H   H    P SCQH
Sbjct: 58  LQGHIRTHTGEKPFSCQH 75


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 151 LVSHNPLHPAASPHSCQH 98
           L +H  LH    P+ C H
Sbjct: 25  LKTHMRLHTGEKPYHCSH 42


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 220 NPTWHCIVG 246
           NP WH I+G
Sbjct: 48  NPMWHGILG 56


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 175 KDIAAFIKKEFDKN 216
           KDI  + K EFD N
Sbjct: 668 KDILIYHKDEFDMN 681


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 175 KDIAAFIKKEFDKN 216
           KDI  + K EFD N
Sbjct: 668 KDILIYHKDEFDMN 681


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 220 NPTWHCIVG 246
           NP WH I+G
Sbjct: 14  NPMWHGILG 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,717
Number of Sequences: 438
Number of extensions: 1326
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)