Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O21
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 268 3e-73
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 268 4e-73
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 268 4e-73
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 150 1e-37
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 143 1e-35
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 81 8e-17
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 54 1e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 45 5e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 3e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 41 8e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 41 8e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.016
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 32 0.037
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.35
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 28 0.60
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.60
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 0.80
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 1.4
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 2.4
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 25 4.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 4.3
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 5.6
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 5.6
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 7.4
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 24 9.8
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 24 9.8
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 9.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 24 9.8
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 24 9.8
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 9.8
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 24 9.8
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.8
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 9.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 268 bits (657), Expect = 3e-73
Identities = 125/138 (90%), Positives = 130/138 (94%)
Frame = +2
Query: 47 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G GSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA CAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 407 GEFEAGISKNGQTREHAL 460
GEFEAGISK+GQTREHAL
Sbjct: 121 GEFEAGISKDGQTREHAL 138
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 268 bits (656), Expect = 4e-73
Identities = 124/138 (89%), Positives = 130/138 (94%)
Frame = +2
Query: 47 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G GSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA CA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 407 GEFEAGISKNGQTREHAL 460
GEFEAGISK+GQTREHAL
Sbjct: 121 GEFEAGISKDGQTREHAL 138
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 268 bits (656), Expect = 4e-73
Identities = 124/138 (89%), Positives = 130/138 (94%)
Frame = +2
Query: 47 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVL 226
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+G GSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 227 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGT 406
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQA CA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 407 GEFEAGISKNGQTREHAL 460
GEFEAGISK+GQTREHAL
Sbjct: 121 GEFEAGISKDGQTREHAL 138
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 150 bits (363), Expect = 1e-37
Identities = 67/134 (50%), Positives = 94/134 (70%)
Frame = +2
Query: 59 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDKLK 238
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E G S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 239 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTGEFE 418
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQA VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 419 AGISKNGQTREHAL 460
AG + GQTREHA+
Sbjct: 356 AGFERGGQTREHAV 369
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 143 bits (347), Expect = 1e-35
Identities = 67/130 (51%), Positives = 87/130 (66%)
Frame = +2
Query: 68 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDKLKAER 247
+++VV GHVDSGKST G ++++ G I+ R+++K EA G GSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 248 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTGEFEAGI 427
RG+T+D+A FE+ K I DAPGHRDFI MI G S A AVL+V + FE G
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 428 SKNGQTREHA 457
+NGQTREHA
Sbjct: 298 LENGQTREHA 307
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 81.0 bits (191), Expect = 8e-17
Identities = 52/136 (38%), Positives = 71/136 (52%)
Frame = +2
Query: 53 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDK 232
++K H+NI IGHVD GK+T T I KC ++G SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 233 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTGE 412
E+ RGITI A ++ET + +D PGH D+IKNMITG + A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 413 FEAGISKNGQTREHAL 460
QTREH L
Sbjct: 154 MP-------QTREHLL 162
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 53.6 bits (123), Expect = 1e-08
Identities = 36/113 (31%), Positives = 52/113 (46%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDKLKAERE 250
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 251 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTG 409
RGITI+ A F + +ID PGH DF + + AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.2 bits (102), Expect = 5e-06
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDKLKAERE 250
N VI H+D GKST + ++ G I++ F + LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHN---FRNQ-------------FLDKLEVERR 103
Query: 251 RGITIDIA----LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTG 409
RGIT+ ++ + Y + +ID PGH DF ++ + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 42.3 bits (95), Expect = 3e-05
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGIGSFKYAWVLDKLKAERE 250
NI + H+DSGK+T T ++Y G I K+ E+ G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEVR-GKDNVGAKMDFMELERE 110
Query: 251 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDFIKNMITGTSQA 373
+GITI A W+ FE Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDFTIEVERALRVL 169
Query: 374 TCAVLIVAAGTGEFEAGISKNGQTREH 454
AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.1 bits (92), Expect = 8e-05
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +2
Query: 47 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI------DKRTIEKFEKEAQEMGIGSF 208
MGK N+ VI HVD GKST T L+ K G I D R ++ + QE G+ +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDT-RADEQERGV-TI 70
Query: 209 KYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVL 388
K + L AE D+ + + V +ID+PGH DF + +T + T L
Sbjct: 71 KSTAI--SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF-SSEVTAALRVTDGAL 126
Query: 389 IV 394
+V
Sbjct: 127 VV 128
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.1 bits (92), Expect = 8e-05
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Frame = +2
Query: 47 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI------DKRTIEKFEKEAQEMGIGSF 208
MGK N+ VI HVD GKST T L+ K G I D R ++ + QE G+ +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDT-RADEQERGV-TI 70
Query: 209 KYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVL 388
K + L AE D+ + + V +ID+PGH DF + +T + T L
Sbjct: 71 KSTAI--SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF-SSEVTAALRVTDGAL 126
Query: 389 IV 394
+V
Sbjct: 127 VV 128
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.016
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 254 GITIDIALWK--FETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTG 409
GIT I + F+ G ++T +D PGH F G + A VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 32.3 bits (70), Expect = 0.037
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 80 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGIGSFKYAWVLDKLKAERER 253
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 254 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIV 394
G K + + IID PGH F GTS A+L++
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.35
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 227 DKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFIKN 349
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 0.60
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 302 YVTIIDAPGHRDFIKNMITGTSQATCAVLIVA 397
+V+ +D PGH + M+ G + A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 41 PKMGKEKVHINIVVIGHVDSGKST 112
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 0.60
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 7/120 (5%)
Frame = +2
Query: 71 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGIG----SFKYAWVLD 229
N ++ HVD GK+T L+ G I + T+ + E+ G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 230 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAAGTG 409
+ E+ + D Y + +ID+PGH DF + + + A ++V A G
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 0.80
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 138 AVVSTNVPSKSSRRKPRKWVLVPS 209
A++S + K + +P KWV+VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 197 IGSFK-YAWVLDKLKA-ERERGITID-IALWKFETGKYYVTIIDAPGHRDFIKNMIT 358
+ +FK Y L+ LK E++ G++ID + F+ G + + PG+ DF+ N ++
Sbjct: 1 MSAFKPYTEALEVLKKYEKKDGLSIDDLIRHNFQGGLTFNDFLILPGYIDFVPNNVS 57
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 258 IPRSRSAFSLSNTQAYLKEPIPISWASFSNFSMVRLSIPPH 136
IP+ A S+ N++ + ++ +P + S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 4.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 2 HEGIYTLIVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLI 130
HEG T+ V + P + KE V + H DSGK T +G ++
Sbjct: 42 HEGKDTVSVDVELPGVKKEDVQV------HYDSGKLTISGEVV 78
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 415 EFTSTSGDNKHGARRLRRSSDHVLDE 338
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 288 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPIPISWASFSNFSMV 157
S F IS+ +P FSL+ ++ K +PI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.6
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 259 HHRY-CSLEVRNRQILCHHH 315
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.6 bits (51), Expect = 7.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 303 MSPSSTLLDTEISSRT*SLERLKRRAPCLLSPLVLVNSK 419
+ + L+DT IS S L + CLLS ++ V SK
Sbjct: 737 LKSKNLLIDTIISHLQSSTIHLNEESVCLLSRIIAVISK 775
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -2
Query: 355 DHVLDEISVSRSVDDGDIVFAGFELP 278
DH L + ++ + D ++FAG+++P
Sbjct: 38 DHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 254 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQATCAVLIVAA 400
G D ++K + + + + PGH D I+++ S + LI A
Sbjct: 189 GCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 121 SLDLQMRWYRQTYHRKVREGSPGNGYWFLQIRL 219
SL L+ YR + RK+ GN W I L
Sbjct: 5 SLSLRQLDYRDWFQRKISRDIYGNSTWLTGIDL 37
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 132 TNAVVSTNVPSKSSRRKPRKWVLVPSNTLGYW 227
T V+S K + R V+VPS+TLG W
Sbjct: 446 TCQVISFLASLKEKGIQNRHLVVVPSSTLGNW 477
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 279 QRAISMVIPRSRSAFSLSNTQAYLK 205
Q A+S +IP++RSA N LK
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLK 57
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 74 IVVIGHVDSGKSTTTGHLIYKC 139
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 323 PGHRDFIKNMITGTSQATCAVLIVAAGTGE 412
PGH +I++ + +TCAV +GTGE
Sbjct: 211 PGHGFWIESFDNKSHSSTCAVA--TSGTGE 238
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 77 VVIGHVDSGKSTTTGHLIYKCG 142
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 9.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 325 WTQRFHQEHDHWN 363
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,228
Number of Sequences: 5004
Number of extensions: 40175
Number of successful extensions: 156
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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