Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O20
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    28   1.7  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    25   9.2  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    25   9.2  
U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 290 FCFGINILDNQLSNVIVVLNH-NHS 219
           FCFG+ I+ NQ+S +I V    NHS
Sbjct: 18  FCFGLGIIFNQISLLINVFKEANHS 42


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 238  TTITFESWLSKMLMPKQNRVSIYEYL 315
            T I  ESW+S  L  K+N    Y YL
Sbjct: 976  TIIVKESWMSDCLKNKKNIAKDYNYL 1001


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 278 INILDNQLSNVIVV--LNHNHSRTPFNIVCSITL*LNKYE 165
           +N+L+ +L  + VV  +N NH     +I+C++ + L++++
Sbjct: 416 LNVLEPELVPIGVVARMNRNHEDEAGDIICTMKMLLHRWD 455


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 278 INILDNQLSNVIVV--LNHNHSRTPFNIVCSITL*LNKYE 165
           +N+L+ +L  + VV  +N NH     +I+C++ + L++++
Sbjct: 416 LNVLEPELVPIGVVARMNRNHEDEAGDIICTMKMLLHRWD 455


>U41539-3|AAB52496.1|  203|Caenorhabditis elegans Hypothetical
           protein K05G3.1 protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 247 TFESWLSKMLMPKQNRVSIYEYL 315
           TF  W   +L P Q R ++Y+ +
Sbjct: 174 TFSDWTRPVLRPSQERYAVYDVI 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,182,822
Number of Sequences: 27780
Number of extensions: 71753
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)