Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O19
(202 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 26 0.60
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 0.60
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 24 2.4
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 4.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 23 5.5
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 23 5.5
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 23 7.3
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 23 7.3
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 23 7.3
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 23 7.3
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 23 7.3
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 22 9.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 22 9.7
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 0.60
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 66 NPIAQTYNLRSYSSNNIVLYVFVGTMV--VVSSTGLDAGGRRAS 191
NP+ TY+ S I V VG+M ++SS +D G+R S
Sbjct: 45 NPVTDTYSYSSARQGLITGMVNVGSMTGCILSSPLMDRIGKRVS 88
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 0.60
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 85 IIYVLIAVIILFYMFLLAQWWLFRQLVSMPVEGV 186
II +++ + FY+ A WW R + + + G+
Sbjct: 70 IILSIVSAALSFYLDTNAVWWAIRTITHLEIVGL 103
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 202 KEWEEARLPPASRPVD 155
K+WEE LPP +R D
Sbjct: 165 KQWEEWFLPPQARETD 180
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 76 LKHIIYVLIAVIILFYMFLLAQ 141
++ + Y+L+A +ILF+M L ++
Sbjct: 509 IRCVPYILLACLILFFMTLFSR 530
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 142 WWLFRQLVSMPVEGVLLP 195
+WL ++ +P+ GVLLP
Sbjct: 159 YWLCKEYNFVPIYGVLLP 176
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 69 PIAQTYNLRSYSSNNIVLYVFVGTMVVVSSTGL 167
P+A L S +SN YV V ++SST L
Sbjct: 418 PMASPAKLTSDTSNKSSAYVVVDHHPIISSTQL 450
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 79 KHIIYVLIAVIILFYMFLLAQWWLFRQLV 165
K +I L A++ F F A+W LF+ +
Sbjct: 79 KEVIDSLGAIVYTFRSFDEAEWSLFKNFI 107
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 93 VNYMFELLDSCTTNTLRQ*YER 28
V +FE + CT +TL + YE+
Sbjct: 734 VKNIFEAVRKCTFDTLEEEYEK 755
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 22.6 bits (46), Expect = 7.3
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2
Query: 116 CFICFCWH 139
CF FCWH
Sbjct: 461 CFSTFCWH 468
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 88 IYVLIAVIILFYMFLLAQWWLF 153
I+V+I V ILF + LA +W +
Sbjct: 214 IFVIIIVQILFSIPFLAYFWSY 235
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 77 SYWILVQLILFDNNMKEN 24
S W+ L+ DNNM EN
Sbjct: 165 SNWLYDALVELDNNMGEN 182
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 164 SRCRWKACFFPLL 202
S C W AC FP L
Sbjct: 125 SLCLWDACHFPPL 137
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 102 YKNVNYMFELLDSCT 58
YK + M +LDSCT
Sbjct: 499 YKGIILMLNVLDSCT 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,996
Number of Sequences: 5004
Number of extensions: 12945
Number of successful extensions: 41
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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