Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O19
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    28   1.2  
01_06_1436 - 37353741-37354525,37356508-37356619                       27   1.6  
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922...    26   4.8  
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900...    25   8.4  
01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088...    25   8.4  
01_06_1056 + 34139467-34140013,34141437-34142338                       25   8.4  

>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -2

Query: 201 RSGKKHAFHRHRDQLTKQPPLCQQKHIKQYYYCYKNVNYMFELLDSCTTNTLRQ*YERK 25
           R     +FH++R  L+K   L  +  + Q    YK     F + + C +   R+ YE++
Sbjct: 309 RDAYNASFHQNRQLLSKARDLASRSELAQVQELYKTQVDKF-VAEWCNSKAFREDYEKR 366


>01_06_1436 - 37353741-37354525,37356508-37356619
          Length = 298

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 72  IAQTYNLRSYSSNNIVLYVFVGTMVVVSSTGLDAGG 179
           I Q  +   Y  N  +  V +G +VV+S+ GLD GG
Sbjct: 183 ITQAISATEY--NRFLASVIIGFLVVLSNWGLDVGG 216


>01_01_1159 +
           9224331-9224473,9224586-9224727,9225412-9225483,
           9225853-9225933,9226031-9226144,9226770-9226826,
           9227209-9227310,9227617-9227767,9227851-9227927,
           9228721-9228828,9229684-9229754,9230546-9230687,
           9230903-9231001,9231112-9231240,9231445-9231559,
           9231786-9231853,9233410-9233523,9233587-9233703,
           9234079-9234132,9234221-9234326,9235272-9235402,
           9235489-9235557
          Length = 753

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 147 PPLCQQKHIKQYYYCYKNVNYMFELLDSCTTN 52
           PPL + +  KQ +YCY + + + EL+++  TN
Sbjct: 648 PPLYKVERGKQAHYCYDDAD-LKELVNTFPTN 678


>06_03_1249 -
           28688997-28689248,28689469-28689533,28690016-28690093,
           28691480-28691824,28693314-28693510,28695601-28696601
          Length = 645

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 183 AFHRHRDQLTKQPPLCQQK-HIKQYYYCYKNVNY 85
           A  R    L + P +   K + ++Y+YC +N NY
Sbjct: 498 ALRRKVGMLFQLPAMFDDKNYFEKYFYCGRNYNY 531


>01_06_1689 +
           39204726-39205131,39208214-39208602,39208686-39208820,
           39208936-39209001,39209150-39209218,39209402-39209455
          Length = 372

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 177 HRHRDQLTKQPPLCQQKHIKQYY 109
           H+H+ QL   PP  QQ+ + +Y+
Sbjct: 40  HQHQHQLPPPPPPQQQQMVGRYF 62


>01_06_1056 + 34139467-34140013,34141437-34142338
          Length = 482

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 111 NIVLYVFVGTMVVVSSTGLD 170
           N VLYV +G+ V VSS+ LD
Sbjct: 295 NSVLYVSLGSFVSVSSSQLD 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,460
Number of Sequences: 37544
Number of extensions: 78219
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)