Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O19
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    25   7.4  
AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical ...    25   9.8  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 195  GKKHAFHRHRDQLTKQPPLCQQKHIKQYY 109
            G +H  H H+D+   Q    + +HI  Y+
Sbjct: 957  GSEHVHHYHQDENAHQHSTAENEHIHHYH 985


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
           family protein 6 protein.
          Length = 982

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 76  LKHIIYVLIAVIILFYMFLLAQWWLFRQLVSMPV 177
           LK    V IAV++LF  F   +W+ FR   S P+
Sbjct: 298 LKPYFNVTIAVLVLFTAFYSVKWY-FRMDHSWPL 330


>AF125952-3|AAD14699.1|  475|Caenorhabditis elegans Hypothetical
           protein C01B4.7 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 YMFLLAQWWLFRQLVSMPVEGVL 189
           Y+ +L+  W F  ++ MP+ G+L
Sbjct: 180 YLAILSCAWQFSNVIFMPISGIL 202


>AC006722-9|ABP57813.1|  475|Caenorhabditis elegans Hypothetical
           protein Y19D10A.4 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 YMFLLAQWWLFRQLVSMPVEGVL 189
           Y+ +L+  W F  ++ MP+ G+L
Sbjct: 180 YLAILSCAWQFSNVIFMPISGIL 202


>Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical
           protein F19H8.2 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 177 HRHRDQLTKQPPLCQQKHIKQYYYCYKNVNY 85
           H  + ++T++PP   +KH+K+ +   K  N+
Sbjct: 245 HMEKSEVTQKPPNQHKKHMKKGHGMRKEHNH 275


>Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical
           protein T25C8.1 protein.
          Length = 435

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 159 LTKQP-PLCQQKHIKQYYYCYKNVNYMFELLD 67
           LT+ P PL    +   + YC +N  +  E+LD
Sbjct: 171 LTQNPDPLISHHNAHSWGYCTENATWQSEILD 202


>U58757-9|AAM75377.1|  503|Caenorhabditis elegans Hypothetical
           protein C01B10.6b protein.
          Length = 503

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 156 TKQPPLCQQKHIKQYYYCYKNV 91
           +KQ   C Q  +  Y  CYKN+
Sbjct: 357 SKQKRACGQNALSPYGVCYKNI 378


>U58757-8|AAC47918.3|  506|Caenorhabditis elegans Hypothetical
           protein C01B10.6a protein.
          Length = 506

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 156 TKQPPLCQQKHIKQYYYCYKNV 91
           +KQ   C Q  +  Y  CYKN+
Sbjct: 360 SKQKRACGQNALSPYGVCYKNI 381


>AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical
           protein H20E11.1a protein.
          Length = 481

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 93  RSYSSNNIVLYVFVGTMVVVSSTGLDAGGR 182
           R+Y  NN++ YVF  T   V    +DA  +
Sbjct: 99  RNYP-NNVIFYVFPQTSTTVDVQNIDAASK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,614,209
Number of Sequences: 27780
Number of extensions: 72771
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)