Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O18
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 151 1e-37
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 36 0.008
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 29 0.97
02_05_0009 + 24942361-24943842 29 1.7
07_03_0444 - 18279368-18279890,18279995-18280326 27 3.9
05_04_0193 + 18939869-18939988,18940714-18941012,18941078-189411... 27 5.2
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499... 27 6.9
10_02_0115 + 5445580-5445606,5446118-5446609 26 9.1
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 151 bits (367), Expect = 1e-37
Identities = 68/125 (54%), Positives = 90/125 (72%)
Frame = +1
Query: 10 NDLITITETMLSGMVKSIHGTYKVKYRPDGPSGEEVEIDFTPPFARVPMIASLEKILNVR 189
NDLI +TETMLSGMVK + G YK+KY +G +EIDFTPPF ++ MI LE + +
Sbjct: 375 NDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRKIDMIEELEAMAKLN 434
Query: 190 LPSFDTLDTAESNALLRQLCEKHEVECPPPRTTGRVLDKLVGEFLEDKCINPTLILDHPQ 369
+P L + E+N L C K++V+CPPP+TT R+LDKLVG FLE+ C+NPT I++HP+
Sbjct: 435 IPK--DLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINHPE 492
Query: 370 IMSPL 384
IMSPL
Sbjct: 493 IMSPL 497
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +1
Query: 118 EIDFTPPFARVPMIASLEKILNVRLPSF-DTLDTAESNALLRQLCEKHEVECPPPRTTGR 294
EI P+ R M + +++ + SF + L++A++ A + + + G
Sbjct: 426 EISLERPWRRETMHSLVKEATGIDFNSFGEDLESAKNAARGIKTESNENISLQACSSVGH 485
Query: 295 VLDKLVGEFLEDKCINPTLILDHPQIMSPL 384
VL+++ +E + PT +LD+P +SPL
Sbjct: 486 VLNEVFETVVESSLVQPTFVLDYPVEISPL 515
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 29.5 bits (63), Expect = 0.97
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 124 DFTPPFARVPMIAS-LEKILNVRLPSFDTLDTAESNALLRQLCEKHEVECPPPRTTGRVL 300
D PP +P + S E L+ LPS + A S + +H+ + PPPR + R
Sbjct: 500 DMVPPLPPLPSMKSPSESWLSRALPSVSSNPPATS---FLGIHVQHKKQSPPPRCSSRAP 556
Query: 301 DKLVGE 318
KLV +
Sbjct: 557 AKLVAD 562
>02_05_0009 + 24942361-24943842
Length = 493
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 314 PTNLSRTRPVVLGGGHSTSCFSHNCLRRAFDSAVSS 207
P + R ++L GH +S +S NCL RA + +S
Sbjct: 20 PADFRRAHAILLTSGHLSSRYSVNCLIRAASAPSAS 55
>07_03_0444 - 18279368-18279890,18279995-18280326
Length = 284
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 269 HSTSCFSHNCLRRAFDSAVSSVSKEGNLTFKIFSKLAIIGTLAKGGVKSISTSSPL 102
H+ SC+ H RR + AVS S+ G K ++ I+G GV ++T++ L
Sbjct: 9 HALSCYLHPRRRRRGNVAVSPRSEGGGARRKEEVEIVIVG----AGVAGLATAASL 60
>05_04_0193 +
18939869-18939988,18940714-18941012,18941078-18941186,
18941874-18941999,18942178-18942218,18942614-18942744,
18943218-18943291,18944215-18944450,18944543-18944863,
18945023-18945086
Length = 506
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 100 PSGEEVEIDFTPPFARVPMIASLEKILNVRLPSFDTLDTAESNALLRQL 246
PSG D + +R+PM + I R TL++A+ + L R+L
Sbjct: 448 PSGARHMDDMSSQSSRIPMSVDVGAIFGTRPAPRPTLNSADKSRLKRKL 496
>09_04_0725 +
19749227-19749361,19749705-19749772,19749869-19749938,
19750244-19751482,19755359-19755423,19755502-19755655,
19755725-19755733
Length = 579
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 320 NSPTNLSRTRPVVLGGGHSTSCFSHNCLRRAFDSAVSSVSKEG 192
+S T +S T PV + G CFSH+ R+ S V S S +G
Sbjct: 92 DSGTRVSST-PVSINNG-KVDCFSHSPPRQVIASNVHSQSADG 132
>10_02_0115 + 5445580-5445606,5446118-5446609
Length = 172
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 51 GEKHSWYLQGQIPSRWSQW*R 113
G + +WYL IP W W R
Sbjct: 12 GTRDTWYLVPMIPGTWVAWRR 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,214
Number of Sequences: 37544
Number of extensions: 204544
Number of successful extensions: 541
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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