Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O17
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 163 5e-42
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 5e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 163 5e-42
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 49 2e-07
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 45 3e-06
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 41 4e-05
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 1.3
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 4.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 4.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 5.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 5.4
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 5.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 24 5.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 7.1
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 24 7.1
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 24 7.1
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 23 9.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 23 9.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 23 9.4
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 23 9.4
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 9.4
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 23 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 163 bits (397), Expect = 5e-42
Identities = 72/107 (67%), Positives = 87/107 (81%)
Frame = +3
Query: 15 GDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIG 194
GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIG
Sbjct: 196 GDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIG 255
Query: 195 PIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
IGT VGRVETG++KPG +V APA +TTEVKSVEM+HE+L +P
Sbjct: 256 GIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (397), Expect = 5e-42
Identities = 72/107 (67%), Positives = 87/107 (81%)
Frame = +3
Query: 15 GDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIG 194
GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIG
Sbjct: 196 GDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIG 255
Query: 195 PIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
IGT VGRVETG++KPG +V APA +TTEVKSVEM+HE+L +P
Sbjct: 256 GIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 163 bits (397), Expect = 5e-42
Identities = 72/107 (67%), Positives = 87/107 (81%)
Frame = +3
Query: 15 GDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIG 194
GDNM+EP+T MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIG
Sbjct: 196 GDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIG 255
Query: 195 PIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
IGT VGRVETG++KPG +V APA +TTEVKSVEM+HE+L +P
Sbjct: 256 GIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLP 302
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 48.8 bits (111), Expect = 2e-07
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 105 LIEALDAILP-PARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGT--VVVCAPAN 275
L+EA+D+ + P R TD + ++DV+ I GT GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 276 ITTEVKSVEMYHEALQEAV 332
+ T V +EM+ + L AV
Sbjct: 294 LKTTVTGIEMFKKQLDAAV 312
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 45.2 bits (102), Expect = 3e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 93 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGTVVVCAPA 272
+G L+ ALD ++PP +P K LRL + DVY+ P GRVE G ++ V+ +
Sbjct: 383 KGPTLLSALDQLVPPEKPYRKPLRLSIDDVYR-SPRSVTVTGRVEAGNVQVNQVLYDVSS 441
Query: 273 NITTEVKSV 299
VK+V
Sbjct: 442 QEDAYVKNV 450
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.1 bits (92), Expect = 4e-05
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +3
Query: 93 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGTVVVCAPA 272
+G L+E LD++ R + +P+ YK +GT G++E G +K + V+ P
Sbjct: 447 QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPI 504
Query: 273 NITTEVKSVEMYHEALQE 326
N T EV ++ Y EA +E
Sbjct: 505 NQTLEVTAI--YDEADEE 520
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 1.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 234 ILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
+L G V+ A A +T VKS+ YH + P
Sbjct: 1492 VLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTP 1525
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 185 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 18
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 63 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 170
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 4.1
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 305 HFHGLDFSSDVSRGTNDNSTRL*DTSFNSTYGKCSNRADFVYVLQG-----KTESLVSGA 141
++H D+ ++++ N ++T++ ++N + A Q +T L S +
Sbjct: 261 NYHLFDYYNEIASSPNPSTTKI---TYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTS 317
Query: 140 SRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 39
S + VEGLN S N PS + HFG
Sbjct: 318 SEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 102 CLIEALDAILPPARPTDKALRLPLQD 179
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.2 bits (50), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 121 SRASIRHLPSAFP-SLRSTNHPLNHGILVDG-SNMLSPPR 8
+ + + H P A P S R+ +PLN+G V N S P+
Sbjct: 881 ANSPVHHYPFATPPSQRANKYPLNNGANVPALLNSFSSPQ 920
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 15 GDNMLEPSTKMPWFKGWLVERKEGK 89
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 5.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 21 NMLEPSTKMPWF 56
N LEP TK PW+
Sbjct: 148 NFLEPLTKTPWY 159
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 46 CHGSRDGWLSVKKERLKVNALLRPSTPSFRLL 141
C GS G+ + E +LL P+ SFR L
Sbjct: 994 CVGSFKGFDIISLENAVFQSLLNPADTSFRFL 1025
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 23.8 bits (49), Expect = 7.1
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +3
Query: 144 PTDKALRLPLQDVYKIG-----PIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMY 308
P K +LP +D+ K+ P+ T +ET KPG V N+ E K ++
Sbjct: 115 PDVKDFKLP-KDILKVKEKSEKPLETSQKVEIETVETKPGEPEVKQETNLQKEKKESKVK 173
Query: 309 HEALQEAV 332
E+ +E +
Sbjct: 174 LESKEEKI 181
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 216 GRVETGILKPGTVVVCAPANITTEVKSVEMYHEA 317
GRV+ L+P ++C+ N T + M HEA
Sbjct: 163 GRVQKA-LRPTPNLICSKCNTTFNHSTALMMHEA 195
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 292 LTSVVMLAGAQTTTVPGFRIPVSTLPTENVPIGPI 188
+TS + T +P S LP++N P P+
Sbjct: 315 MTSNLTSNSGSMTNSTSTDLPTSNLPSQNAPARPV 349
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 112 SIRHLPSAFPSLRSTNHPLNHGILVDGSNMLS 17
S+ PS +TN PL+H +V SN S
Sbjct: 158 SVNSPPSYGIMASATNQPLSHPTIVPSSNSSS 189
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 97 VNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSALLE 204
V +LLR +TP R+L TR P + Y +S L +
Sbjct: 190 VLSLLRANTPVSRMLTTYTRRG--PGQAYLRSILYQ 223
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 61 DGWLSVKKERLKVNALLRPST 123
D W+SVKK LK+ L T
Sbjct: 458 DIWISVKKTALKIGMALEAHT 478
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 36 STKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPL 173
S PW + + VER+ + + ++ +D I P P + A+R L
Sbjct: 222 SQSCPWHRQYKVEREVSRIFHQDILHFIDYITP--TPEEHAVRKTL 265
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 169 GRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHP 59
G+ R++ GRA ++S S H P + S TN P
Sbjct: 295 GKYRSVQNGRALNYVSSFNSDSHSPKDYISQSYTNEP 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,870
Number of Sequences: 5004
Number of extensions: 29027
Number of successful extensions: 112
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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