Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O17
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   179   5e-46
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   179   5e-46
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   179   5e-46
U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation fact...    50   5e-07
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    40   4e-04
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    40   4e-04
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    34   0.022
U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation f...    34   0.029
AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial...    34   0.029
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U49829-1|AAA93382.1|  138|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   4.4  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   4.4  
AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical ...    26   5.8  
AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical ...    26   5.8  
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    26   7.7  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    26   7.7  
AF106579-6|ABS19465.1|  406|Caenorhabditis elegans Hypothetical ...    26   7.7  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    26   7.7  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  179 bits (435), Expect = 5e-46
 Identities = 83/111 (74%), Positives = 92/111 (82%)
 Frame = +3

Query: 3   SARGGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 182
           S   GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDV
Sbjct: 160 SGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDV 219

Query: 183 YKIGPIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
           YKIG IGT  VGRVETGI+KPG VV  AP N+TTEVKSVEM+HE+L EAVP
Sbjct: 220 YKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 270


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  179 bits (435), Expect = 5e-46
 Identities = 83/111 (74%), Positives = 92/111 (82%)
 Frame = +3

Query: 3   SARGGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 182
           S   GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDV
Sbjct: 194 SGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDV 253

Query: 183 YKIGPIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
           YKIG IGT  VGRVETGI+KPG VV  AP N+TTEVKSVEM+HE+L EAVP
Sbjct: 254 YKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  179 bits (435), Expect = 5e-46
 Identities = 83/111 (74%), Positives = 92/111 (82%)
 Frame = +3

Query: 3   SARGGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 182
           S   GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDV
Sbjct: 194 SGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDV 253

Query: 183 YKIGPIGTFSVGRVETGILKPGTVVVCAPANITTEVKSVEMYHEALQEAVP 335
           YKIG IGT  VGRVETGI+KPG VV  AP N+TTEVKSVEM+HE+L EAVP
Sbjct: 254 YKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVP 304


>U51994-9|AAO21383.1|  267|Caenorhabditis elegans Elongation factor
           protein 4, isoformc protein.
          Length = 267

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 29/63 (46%), Positives = 33/63 (52%)
 Frame = +1

Query: 16  EITCWSRPPKCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSA 195
           E TC   P  CHGSRDG L+ +KE L      R  TPS    A LT  SVF  +  T+S 
Sbjct: 181 ETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRSE 240

Query: 196 LLE 204
            LE
Sbjct: 241 ELE 243


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 93  EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETG 233
           +G CL+E +D+ + P  P+D  LR+ + DV K+        G++E+G
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 417


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 93  EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETG 233
           +G CL+E +D+ + P  P+D  LR+ + DV K+        G++E+G
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 435


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  GKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGTVVVCAPA 272
           G C IE +D +LP   R  +  +R  + + Y    +GT  +G++E+G ++ G  +V  P 
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPN 375

Query: 273 NITTEVKSV 299
               +V  +
Sbjct: 376 KQPVQVLQI 384


>U80437-9|AAN84843.1|  439|Caenorhabditis elegans Tu elongation
           factor (ef-tu), mitochondrialprotein 2 protein.
          Length = 439

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 105 LIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGTVVVCA--PANI 278
           LI+ALD++  P R       +P+     I   GT  VG +E G+LK G  V        +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281

Query: 279 TTEVKSVEMYHEALQE 326
            T    ++++ ++++E
Sbjct: 282 QTTASDIQVFGKSVKE 297


>AB010028-1|BAA31345.1|  439|Caenorhabditis elegans mitochondrial
           elongation factorTu homologue protein.
          Length = 439

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 105 LIEALDAILPPARPTDKALRLPLQDVYKIGPIGTFSVGRVETGILKPGTVVVCA--PANI 278
           LI+ALD++  P R       +P+     I   GT  VG +E G+LK G  V        +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281

Query: 279 TTEVKSVEMYHEALQE 326
            T    ++++ ++++E
Sbjct: 282 QTTASDIQVFGKSVKE 297


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 28  WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 165
           WS  P K  GS+D W +    R  +N+  R S  + R  +  +RLSV
Sbjct: 6   WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52


>U49829-1|AAA93382.1|  138|Caenorhabditis elegans Hypothetical
           protein F27D9.3 protein.
          Length = 138

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  ERKEGKAEGKCLIEALDAILPPARPTDKA-LRLPLQ 176
           E+K+GK + +C+ EA DA+    RP+D+  LR+ L+
Sbjct: 91  EKKQGK-KNECVREADDAVDARPRPSDRGRLRVLLE 125


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 256 TTVPGFRIPVSTLPTENVPIGPILYTSCR 170
           +TVP     VS  PT++ P+ P+  T  R
Sbjct: 432 STVPQSTASVSARPTQSAPVDPVSQTMAR 460


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 256 TTVPGFRIPVSTLPTENVPIGPILYTSCR 170
           +TVP     VS  PT++ P+ P+  T  R
Sbjct: 432 STVPQSTASVSARPTQSAPVDPVSQTMAR 460


>AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical
           protein C34B2.3 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 77  TLNQPSLEPWHFGGRLQHVISAS 9
           TL  PS  PW + G L+H+  A+
Sbjct: 206 TLKPPSAHPWKYVGSLRHMPRAA 228


>AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical
           protein F33D11.7 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 77  TLNQPSLEPWHFGGRLQHVISAS 9
           TL  PS  PW + G L+H+  A+
Sbjct: 205 TLKPPSAHPWKYVGSLRHMPRAA 227


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = -3

Query: 209 KCSNRADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 57
           +CS   DF+  ++  ++   S   +  D V   ++ ++ +++F+TL+ PSL
Sbjct: 79  RCSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 RRHPSACSPH*QGSPSSPARRIQN 190
           +RHP+      QG P  P +RIQN
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQN 565


>AF106579-6|ABS19465.1|  406|Caenorhabditis elegans Hypothetical
           protein F54E2.4 protein.
          Length = 406

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 334 GTASCRASWYISTDLTSVVMLAGAQTTTVPGFRIPVSTLPTENVPIGP 191
           G  + +AS    T  ++ +++     T VPG +  V++      P+GP
Sbjct: 86  GRFTAQASNSAGTKQSTCILICAPAPTPVPGAKSAVASPAPPQTPVGP 133


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 RRHPSACSPH*QGSPSSPARRIQN 190
           +RHP+      QG P  P +RIQN
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQN 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,500,559
Number of Sequences: 27780
Number of extensions: 170420
Number of successful extensions: 570
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)