Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O14
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   0.79 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   4.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   5.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   5.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   7.3  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      24   7.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    24   9.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    24   9.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    24   9.7  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.7  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    24   9.7  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 129 LQDLEKXRPVISNERRFQWNNLTQIRRTSKKKTTVKESLCNPRNGNFAHGNVASPN 296
           LQ++   R ++   +  QW  L +     KKK+ VK+    P+ G+  H ++ SP+
Sbjct: 815 LQEVSLVRNLVKTAQ--QW--LDKFAIIFKKKSMVKKEKRKPKRGSATHSHLESPS 866


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 387 TSLALPFASVNAPCKTVWITREDIAGNQLEG 295
           T+  LPF+ +N+PC  + +    +A N L G
Sbjct: 183 TNYDLPFSILNSPCSDLCLNSSSLA-NYLHG 212


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   TRQTWTSLRTRRLRHRMAKFVCSPALPSLT 96
           T Q+WTS   R L +++A       +P+LT
Sbjct: 522 TMQSWTSSLIRSLANKLAATKTDQRIPTLT 551


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 LTQIRRTSKKKTTVKESLCNP 254
           LTQ+   SKK+  V  S+C+P
Sbjct: 650 LTQLFNFSKKQIVVSTSICDP 670


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 239 KPLQPKKWQLCTWECGFPEPSNWLPAMSSRVIQTVLQGALTDANGKAKEV 388
           KP  P  + L T   GFPE  + L + +   I T L+   TD  G+ +++
Sbjct: 456 KPAFPVSFLLVTLTDGFPEKPDPLFSNNDTSIITTLES--TDETGRLRQL 503


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 143 EAXPSDFQRKTIPVEQFNANPSNFKEENHREGKPLQPKKW-QL----CTWE 280
           EA   + +RK +  E++         E + EGK     KW QL    CTWE
Sbjct: 287 EALDIERERKNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWE 337


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 215 KEENHREGKPLQPKKWQLCTWECGFPEP 298
           K +NH +   L P  W +   E  FP P
Sbjct: 59  KHKNHGKKSGLNPHDWWIKVIEHSFPTP 86


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 221 ENHREGKPLQPKKWQL 268
           ENH+E +PL PK+ +L
Sbjct: 212 ENHKEKEPLLPKEEKL 227


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 318 IAGNQLEGSGKPHSHVQSCHFLGCKGF 238
           +A + LE  G  +SH+ S   L C GF
Sbjct: 242 MAWDALESYGLENSHITSAQCLLCLGF 268


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 255 LGCKGFPSRW 226
           + C GFPSRW
Sbjct: 696 ISCAGFPSRW 705


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +3

Query: 168 ERRFQWNNLTQIRRTSKKKTTVKESLCNPRNGNFAHGNVASPNLPIGCQQ 317
           +++ Q     Q+++ +K++        NP      H N+ SP+  I   Q
Sbjct: 525 KQQTQMQGPQQVQQQAKRRKAYTSQQLNPAPTAMPHPNITSPSPSISVTQ 574


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 211 VRRICVKLFHWNRLSLEITGRCFSRS 134
           +R +C ++   NR  +E  G CF  S
Sbjct: 222 LRGVCTRIDDDNRYDIEQAGSCFGMS 247


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +2

Query: 188 QFNANPSNFKEENHREGKPLQPKKWQLCTWECGFPEPSNWLPAMSSRVIQTVLQGALTDA 367
           Q++ N  N   +  +    L+  +W L +W  G  E +     + +  +++ L G  ++A
Sbjct: 342 QYSLNQINILRDPLKAVNVLKAIRWMLWSWNFGVSEKT-----IQASFLRSGLLGPHSEA 396

Query: 368 NGKAKEVLQ 394
            G+  E  Q
Sbjct: 397 EGQGMESYQ 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,758
Number of Sequences: 5004
Number of extensions: 39048
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)