Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O14
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    30   0.51 
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    30   0.51 
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    30   0.51 
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      30   0.51 
Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    28   2.1  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    26   8.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    26   8.4  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    26   8.4  

>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +3

Query: 87  LAHTMVRRDAPNTILQDLEKXRPVISNERRFQWNNLTQIRRTSKKKTTVKESLCNPRNGN 266
           + + +VRR++PNT     +    +  N  + +W+ +T ++    K   +   L + RN N
Sbjct: 39  VVYEVVRRNSPNTRFA-CKAELAIDHNNLKTEWDLMTLLKDNKSKHNIIGVELGSERNFN 97

Query: 267 FAHGNVASPNL 299
           +   ++  P+L
Sbjct: 98  YIVMHLVGPSL 108


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +3

Query: 87  LAHTMVRRDAPNTILQDLEKXRPVISNERRFQWNNLTQIRRTSKKKTTVKESLCNPRNGN 266
           + + +VRR++PNT     +    +  N  + +W+ +T ++    K   +   L + RN N
Sbjct: 39  VVYEVVRRNSPNTRFA-CKAELAIDHNNLKTEWDLMTLLKDNKSKHNIIGVELGSERNFN 97

Query: 267 FAHGNVASPNL 299
           +   ++  P+L
Sbjct: 98  YIVMHLVGPSL 108


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 15   DLDFASNSPTPTPHGEVCVFACVALAHTMVRRDAPNTILQDLEKXRPVISNERRFQWNNL 194
            +L   S SPT +  G V VF  V+ +    R   PN++ Q + K   ++      +W NL
Sbjct: 997  NLSQRSFSPTNSMDGPVDVFRSVSASLRSSRTPVPNSLSQLISKVCMIL------RWENL 1050

Query: 195  TQIR 206
            T IR
Sbjct: 1051 TDIR 1054


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 15   DLDFASNSPTPTPHGEVCVFACVALAHTMVRRDAPNTILQDLEKXRPVISNERRFQWNNL 194
            +L   S SPT +  G V VF  V+ +    R   PN++ Q + K   ++      +W NL
Sbjct: 997  NLSQRSFSPTNSMDGPVDVFRSVSASLRSSRTPVPNSLSQLISKVCMIL------RWENL 1050

Query: 195  TQIR 206
            T IR
Sbjct: 1051 TDIR 1054


>Z71265-2|CAA95834.2|  128|Caenorhabditis elegans Hypothetical
           protein M05B5.2 protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 248 QPKKWQLCTWECGFPEPSNWLPAMSSRVIQT 340
           QP  W    W C FP   +W P+     I T
Sbjct: 58  QPTDWDNYNWCCTFPYMGSWKPSCCQFAIPT 88


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 159 ISNERRFQWNNLTQIRRTSKKKTTVKESLCNPRNGNFAHGNVAS 290
           +S  R   W +LT+ R +SK   T         NGNFA   ++S
Sbjct: 281 MSARRAPYWTDLTRKRTSSKNGDTGSSDSMKSLNGNFATAELSS 324


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 138 LEKXRPVISNERRFQWNNLTQIRRTSKKKTTVKESLCNPRN 260
           L+K R V+  ++  Q+N L  + R  KK T  + + C P N
Sbjct: 345 LDKTRAVLYIQKMEQFNELCGVVRNKKKSTMDQITHCEPFN 385


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 254 KKWQ-LCTWECGFPEPSNWLPAMSSRVIQTVLQG 352
           K+WQ L  +   F   SNWL   ++  +QTVL G
Sbjct: 155 KQWQCLIHFVIVFSSSSNWLLVRNAPQVQTVLNG 188


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 170 KTIPVEQFNANPSNFKEENHREG 238
           KT+ V QF +N  NF  E H +G
Sbjct: 165 KTVKVWQFGSNVPNFTLEGHEKG 187


>Z66497-6|CAA91288.1|  312|Caenorhabditis elegans Hypothetical
           protein K08F8.5b protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 140 GEAXPSDFQRKTIPVEQFNANPSNFKEENHREGKPLQPKKWQ 265
           G A PS+    +IP    +A    F    +R GKP+  + WQ
Sbjct: 152 GSAWPSNKNVMSIPKNIPSAGIDQFVALWYRHGKPIMGRAWQ 193


>Z66497-5|CAA91287.1|  340|Caenorhabditis elegans Hypothetical
           protein K08F8.5a protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 140 GEAXPSDFQRKTIPVEQFNANPSNFKEENHREGKPLQPKKWQ 265
           G A PS+    +IP    +A    F    +R GKP+  + WQ
Sbjct: 180 GSAWPSNKNVMSIPKNIPSAGIDQFVALWYRHGKPIMGRAWQ 221


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 168 ERRFQWNNLTQIRRTSKKK----TTVKESLCNPRNGNFAHGNVASPNLPIGCQQCLREL 332
           E  +  ++  QIR+   +K    TT+   LC+ RNGNF    +     P   ++ LR++
Sbjct: 107 EANYPLDSEDQIRKAVFEKLTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQM 165


>Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical
           protein T13F2.4 protein.
          Length = 233

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 ANPSNFKEENHREGKPLQPKKWQL 268
           +N S  K+   R+ KP +PK W++
Sbjct: 35  SNNSKIKKTTKRDAKPKKPKMWRV 58


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 125 SIRGVTPDHRVSEGNAGEHTNFAMRCRS 42
           S R  TP++ ++E  +  HTN AM  RS
Sbjct: 622 SCRQCTPNYNINEECSDRHTNCAMWSRS 649


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 117 GRHAGPSCERGQRRRTHKLRHAVSESASSKRS 22
           GR   P  +RG+   T KLR  +S   S+K S
Sbjct: 79  GRIEAPRPQRGEAEITQKLRRTLSVERSAKAS 110


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 117  GRHAGPSCERGQRRRTHKLRHAVSESASSKRS 22
            GR   P  +RG+   T KLR  +S   S+K S
Sbjct: 4925 GRIEAPRPQRGEAEITQKLRRTLSVERSAKAS 4956


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 168 ERRFQWNNLTQIRRTSKKK----TTVKESLCNPRNGNFAHGNVASPNLPIGCQQCLREL 332
           E  +  ++  QIR+   +K    TT+   LC+ RNGNF    +     P   ++ LR++
Sbjct: 107 EANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQM 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,535,340
Number of Sequences: 27780
Number of extensions: 234367
Number of successful extensions: 809
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)