Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O13
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   1.3  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    24   2.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   5.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    23   5.4  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    22   9.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    22   9.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    22   9.4  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    22   9.4  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 197 LSAALNNCLAGLRLPFLQNLWFL 129
           LS  +N+ +   ++PFLQ LW+L
Sbjct: 618 LSHGINHGILLRKVPFLQYLWYL 640


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 26  QSRIYNHTKTKAHRKELKNRRRSDRIH 106
           Q+++ NH  +K H+K L+   +  + H
Sbjct: 282 QNQLENHENSKKHKKNLRKMNQEIKKH 308


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 144 EPLVPQDLGSSQVWIRSDLLRFFNS 70
           EPL P D+ + +  + S L  FF+S
Sbjct: 338 EPLAPMDVLTERTCLSSYLCNFFHS 362


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = -1

Query: 227  FLALASRVAFLSAALNNCLAGLRLPFLQNLWFLRI*DPAKCGFGLTFFGFLIPFYELLFW 48
            ++AL + +A LS   +  L  L L F    W   +   +  G  + F G   P+   + W
Sbjct: 2233 WIALVALLASLSRYHSWILPILGLGFGAPRWLQTLWGTSNIGIYVPFLGKGAPYLSRMLW 2292

Query: 47   YDCRFLTAIRLVRI 6
                 L  ++ V I
Sbjct: 2293 LYLGLLDTVQTVGI 2306


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 77  LIPFYELLFWYDCR 36
           + PFYE+LF+  CR
Sbjct: 522 MYPFYEVLFYDYCR 535


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 20  EWQSRIYNHTKTKAHRKELKNRRRS-DRIHTWLDPKS*GTRGSVKKVT 160
           EW+ R+Y     K   + LKN +R+ D  H  L     G + ++KK++
Sbjct: 395 EWRLRVYETMIIKG-EESLKNLQRARDGPHNKLWLGVFGNKDTIKKLS 441


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 173 LAGLRLPFLQNLWFLR 126
           L   R+PF + +WF+R
Sbjct: 168 LVKFRVPFTRAIWFIR 183


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 29  SRIYNHTKTKAHRKELKNRRRSD 97
           SR+ N+T  ++H  +L  +RRS+
Sbjct: 406 SRMSNYTGLESHLAQLSFKRRSN 428


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 44  HTKTKAHRKELKNRR 88
           H K K H++ LKN R
Sbjct: 74  HKKGKVHKRRLKNLR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,736
Number of Sequences: 5004
Number of extensions: 14723
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)