Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O13
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       27   2.8  
12_01_1090 + 11337134-11337376,11338124-11338336,11338883-113389...    26   4.9  
10_08_0325 - 16752288-16752712,16755256-16757653                       26   4.9  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    26   4.9  
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    26   4.9  
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979     25   6.5  
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365...    25   6.5  
01_01_0756 - 5836872-5838614                                           25   6.5  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 230 HFLALASRVAFLSAALNNCLAGLRLPFLQNLWFLR 126
           HF A    +++L A L  C   + +P     WFLR
Sbjct: 257 HFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLR 291


>12_01_1090 +
          11337134-11337376,11338124-11338336,11338883-11338973,
          11339356-11339411
          Length = 200

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 11 ELSEWQSRIYNHTKTKAHRKELKNRRR 91
          EL EW+ ++Y+++KT   R +  + +R
Sbjct: 5  ELEEWRDKVYHNSKTYKERTKRWHDKR 31


>10_08_0325 - 16752288-16752712,16755256-16757653
          Length = 940

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 224 LALASRVAFLSAALNNCLAGLRLPFLQNLWFLRI*DPAK 108
           + +ASR+ FLS A NN L+G   P +  L  L++ D A+
Sbjct: 167 ITMASRLEFLSLATNN-LSGAIPPVIGTLANLKLLDLAE 204


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +2

Query: 14  LSEWQSRIYNHTKTKAHRKELKNRRRSDRIHTWLDPKS*GTRGSVKKVTLNPPSSY*ERP 193
           L EW+ R       + H KE +  R  +R    +  +        +K       +  ER 
Sbjct: 496 LKEWEFREREKEYQRQHEKEREKDRERERKREIMKQEDDSDEEDNRKRRRRSSGTLEERK 555

Query: 194 RGKLREK 214
           R +LREK
Sbjct: 556 RRRLREK 562


>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 215 ASRVAFLSAALNNCLAGLRLPFLQNLWFLRI*D 117
           A  V  LS   ++ L+GL  PFL NL FLR+ D
Sbjct: 77  AGSVVALSLG-SSSLSGLISPFLGNLSFLRVLD 108


>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
          Length = 304

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  SRIYNHTKTKAHRKELKNRRRSDR 100
           SR     K KA + ++K RRRSDR
Sbjct: 161 SRPSKENKDKASKVKVKKRRRSDR 184


>05_06_0126 -
           25834129-25834214,25834595-25834658,25836201-25836521,
           25836912-25837040,25837118-25837177,25837251-25837548,
           25837622-25837776,25837959-25838097,25838185-25838266,
           25838337-25838455,25838537-25838664,25838810-25838983,
           25839052-25839203,25839393-25839425,25840362-25841331,
           25841412-25841537
          Length = 1011

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 41  NHTKTKAHRKELKNRRRSDRIHTWLDPK 124
           NH KTK  R  +++ +RS ++    DPK
Sbjct: 836 NHRKTKKERSNMRSTKRSKKV---TDPK 860


>01_01_0756 - 5836872-5838614
          Length = 580

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 101 IHTWLDPKS*GTRGSV 148
           +H WLDPKS  T G +
Sbjct: 362 LHLWLDPKSVATSGGL 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,612,277
Number of Sequences: 37544
Number of extensions: 89597
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)