Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O13
         (236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical p...    27   2.4  
CU457741-17|CAM36359.1|  300|Caenorhabditis elegans Hypothetical...    26   4.1  
AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>Z78542-5|CAB01748.1|  915|Caenorhabditis elegans Hypothetical
           protein F20D1.6 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 26  QSRIYNHTKTKAHRKELKNRRRSDRIHTWLDP 121
           Q+RI+N TK      E+ N    D++  W+ P
Sbjct: 690 QARIFNDTKIAEEILEIFNNATLDQVREWMKP 721


>Z75550-10|CAA99927.2|  444|Caenorhabditis elegans Hypothetical
           protein T22C1.11 protein.
          Length = 444

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   GIYELSEWQSRIYNHTKTKAHRKELKNRRRSDRI 103
           GI  L EWQS + +  K  AHR  + N+R  +R+
Sbjct: 353 GITPLPEWQSGLSSDQKLVAHR--IYNKRYRERM 384


>CU457741-17|CAM36359.1|  300|Caenorhabditis elegans Hypothetical
           protein C42C1.16 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 104 GFGLTFFGFLIPFYELLFWYDCRFLTAI 21
           G G TF G ++P ++  +W    F + I
Sbjct: 36  GCGSTFAGMIVPLFKTSYWRTIEFNSGI 63


>AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.5 protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 164 LRLPFLQNLWFLRI 123
           +R PF+Q +WFL I
Sbjct: 139 IRFPFMQQMWFLEI 152


>Z75543-3|CAA99877.1|  276|Caenorhabditis elegans Hypothetical
           protein K01D12.3 protein.
          Length = 276

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 5   IYELSEWQSRIYNHTKTKAHRKELKNRRRSDRIHTWLD 118
           +YE   +Q R+  H K     K + ++ + D +  W+D
Sbjct: 147 VYEKDRYQDRVTKHVKADYFFKNILHKTKIDML--WID 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,842,721
Number of Sequences: 27780
Number of extensions: 79609
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)