Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O13
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   0.89 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   1.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   2.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   6.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 0.89
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 126 DLGSSQVWIRSDLLRFFNSFL 64
           DL  SQ ++RS L+ F N  +
Sbjct: 177 DLDQSQEYVRSKLVDFLNDLV 197


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 101 IHTWLDPKS*GTRGSVKKVTLNP 169
           IH  L  KS  T   VK+ T+NP
Sbjct: 135 IHRDLPGKSTTTTAEVKRDTINP 157


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  HTKTKAHRKELKNRRRSDR 100
           H+K +  RKE++  R  +R
Sbjct: 59  HSKNEQQRKEMEQMRERER 77


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 101 IHTWLDPKS*GTRGSVKKVTLNP 169
           IH  L  KS  T   VK+ T+NP
Sbjct: 135 IHRDLPGKSTTTTVEVKRDTINP 157


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 197  GKLREKPRLR 226
            GKLR+ PRL+
Sbjct: 1289 GKLRQSPRLK 1298


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 5   IYELSEWQSRIYNHTKT 55
           I +L  W+ RIY    T
Sbjct: 307 IQDLERWRDRIYEAIHT 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,664
Number of Sequences: 438
Number of extensions: 996
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)