Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O11
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 4.0
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 24 4.0
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 5.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 23 7.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 23 9.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 23 9.3
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 23 9.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 23 9.3
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p... 23 9.3
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 23 9.3
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 4.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -2
Query: 225 FSTTWV------YRL*GSIIRPQNILTTVFSCTDD*E*YSKPNISMIETFQRFLLYENAN 64
F TW+ Y S + P I+ V DD + + N IET + F++ A
Sbjct: 915 FKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAK 974
Query: 63 FRNVVNTDADLKRGKEKP 10
+ V DL E+P
Sbjct: 975 YLASVRERRDLAPMLEEP 992
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 4.0
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 32 KSASVLTTF--RKFAFSYNKKRWKVSIILIFGFEYY 133
K++ +L TF RK AF ++K+R + SI+L F Y
Sbjct: 207 KASQILQTFNFRKLAFPFSKRR-RQSILLHDTFYTY 241
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 219 WKNHSTYPKQRWTHQLETMILV 284
W+NH +PK R L+ + LV
Sbjct: 46 WQNHELHPKTRDVSTLDWIFLV 67
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 164 VKMFWGLIMEPYKRYTQVVEKPFH 235
+ M W I E Y+R T PFH
Sbjct: 249 IPMVWKYIFEEYQRKTYSGLAPFH 272
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/40 (27%), Positives = 26/40 (65%)
Frame = -2
Query: 123 KPNISMIETFQRFLLYENANFRNVVNTDADLKRGKEKPPS 4
KP ++++++ ++ Y+ +NF+N V +D+ ++ E PS
Sbjct: 261 KPALTLLQSPKQNSNYDTSNFQNSV-SDSSMQFTNEGMPS 299
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 238 YVEWFFHHLGVPFVRFHYK 182
+++WF HHL FH+K
Sbjct: 441 FIDWFSHHLS--NFNFHWK 457
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 166 QNVLGPYNGTLQTVHP 213
Q++ P+N TLQ+ HP
Sbjct: 292 QSLSDPFNHTLQSFHP 307
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +2
Query: 8 GGFSLPRFKSASVLTTFRKFAFSYNKK 88
G P F + TT++ + FS+ KK
Sbjct: 550 GNTGFPCFFRTFIWTTYKLYPFSFEKK 576
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 98 LSNVFCYTRTQIFGTWSTQTLI 33
LSN+F Y R W TL+
Sbjct: 871 LSNLFSYCRVDASSHWDKDTLL 892
>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 248
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 189 WNLTNGTPKWWKNHSTYPKQRWTHQLETMIL 281
WNL T + +KN + YP++ + +I+
Sbjct: 43 WNLVTKTYEVYKNPNDYPQKEDFPNINAIII 73
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -3
Query: 272 CLQLMCPSLLGICGMVFPPLG 210
C+ ++C + +CG++ P LG
Sbjct: 261 CVVIICVIVAVLCGVLIPVLG 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,205
Number of Sequences: 5004
Number of extensions: 28885
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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