Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O11
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 28 1.5
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 27 2.0
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694... 27 2.6
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 27 3.5
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 27 3.5
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 27 3.5
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009 26 4.6
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 26 4.6
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 25 8.0
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 176 WGLIMEPYKRYTQVVEKPFHISQAAMDTSTGDNDP 280
W EP + +V++P H S T GD DP
Sbjct: 35 WAGEAEPRVAFRNIVQRPRHRSSGETVTVVGDTDP 69
>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 195 LTNGTPKWWKNHSTYP 242
L NGTP WW + T P
Sbjct: 1594 LNNGTPPWWSFYDTNP 1609
>01_06_0638 -
30768546-30768779,30768908-30769017,30769301-30769490,
30769842-30769914,30770007-30770063,30770147-30770211,
30770278-30770488,30770568-30770650,30771123-30771158,
30771611-30771713,30771813-30771899,30772210-30772403
Length = 480
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 166 QNVLGPYNGTLQTVHP 213
Q+VLGPY+ L+ +HP
Sbjct: 447 QHVLGPYSNLLEPIHP 462
>07_03_1760 - 29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 107 ILIFGFEYYS*SSVQLNTVVKMFWGLIMEPYKRYTQVVEKPFHISQAAMDTSTGDND 277
I+I+G E S S L V+ G I+ YT+ ++KP H+ A + T D
Sbjct: 1198 IIIYG-ECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSAD 1253
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 189 IIRPQNILTTVFSCTDD*E*YSKPNISMIETFQRFLLYENANFRNVVNTDADLKRGKEK 13
++ NILTT+F D+ + Y PN S++ T Y + N + +N D+ E+
Sbjct: 588 VVEEMNILTTIFLKNDNEKVY-YPN-SVLSTKAISNFYRSPNMYDTINFTIDVSTSIER 644
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 203 RYTQVVEKPFHISQAAMDTSTGDNDPCQVMV 295
R Q++E PF + D + D DPC++++
Sbjct: 682 RIPQLLEHPFLVPLVPRDLPSIDQDPCRLLM 712
>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
Length = 431
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -2
Query: 192 SIIRPQNILTTVFSCTDD*E*YSKPNISMIETFQRFLLYE---NANFRNVVNTDADLKRG 22
S++ P+ + VFSC D E + KP+ + R + E + RN+V
Sbjct: 182 SVLDPRTLAAVVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWL 241
Query: 21 KEKPPSC 1
K+ P C
Sbjct: 242 KKNAPVC 248
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 195 LTNGTPKWWKNHSTYPKQRW 254
+ NG+P+ WK +TY K +W
Sbjct: 560 IINGSPEVWKWLTTYHKLKW 579
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 219 WKNHSTYPKQRWTHQLETMILV 284
W H T+P Q W ++T +L+
Sbjct: 646 WFAHKTFPGQNWILLIKTPVLI 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,904
Number of Sequences: 37544
Number of extensions: 170971
Number of successful extensions: 377
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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