Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O11
(295 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X66733-1|CAA47271.1| 699|Homo sapiens epican protein. 31 0.89
X56794-1|CAA40133.1| 493|Homo sapiens CD44R1 protein. 31 0.89
X55150-1|CAA38951.1| 493|Homo sapiens CD44E (epithelial form) p... 31 0.89
S82326-1|AAD14389.1| 177|Homo sapiens CD44 protein. 31 0.89
L05424-5|AAB13626.1| 668|Homo sapiens cell surface glycoprotein... 31 0.89
L05424-3|AAB13627.1| 493|Homo sapiens cell surface glycoprotein... 31 0.89
L05424-2|AAB13625.1| 691|Homo sapiens cell surface glycoprotein... 31 0.89
L05424-1|AAB13628.1| 742|Homo sapiens cell surface glycoprotein... 31 0.89
L05423-1|AAB13623.1| 675|Homo sapiens cell surface glycoprotein... 31 0.89
EF581837-1|ABQ59315.1| 429|Homo sapiens CD44 variant protein. 31 0.89
BC004372-1|AAH04372.1| 699|Homo sapiens CD44 molecule (Indian b... 31 0.89
AY101192-1|AAM50040.1| 493|Homo sapiens CD44 antigen protein. 31 0.89
AL133330-5|CAC10345.1| 676|Homo sapiens CD44 molecule (Indian b... 31 0.89
AL133330-4|CAC10347.1| 719|Homo sapiens CD44 molecule (Indian b... 31 0.89
AL133330-3|CAC10346.1| 470|Homo sapiens CD44 molecule (Indian b... 31 0.89
AJ251595-1|CAB61878.1| 742|Homo sapiens transmembrane glycoprot... 31 0.89
BC030541-1|AAH30541.1| 466|Homo sapiens WD repeat domain 1 prot... 30 1.5
BC002489-1|AAH02489.1| 606|Homo sapiens WD repeat domain 1 prot... 30 1.5
BC000201-1|AAH00201.1| 606|Homo sapiens WD repeat domain 1 prot... 30 1.5
AK222897-1|BAD96617.1| 606|Homo sapiens WD repeat-containing pr... 30 1.5
AK222764-1|BAD96484.1| 606|Homo sapiens WD repeat-containing pr... 30 1.5
AF020260-1|AAD05045.1| 534|Homo sapiens WDR1 protein protein. 30 1.5
AF020056-1|AAD05044.1| 606|Homo sapiens WDR1 protein protein. 30 1.5
AB209746-1|BAD92983.1| 624|Homo sapiens WD repeat-containing pr... 30 1.5
AB010427-1|BAA31855.2| 606|Homo sapiens NORI-1 protein. 30 1.5
M24915-1|AAA35674.1| 361|Homo sapiens protein ( Human CDw44 ant... 28 4.7
U40373-1|AAA82949.1| 361|Homo sapiens cell surface glycoprotein... 28 6.2
S66400-2|AAB27919.1| 395|Homo sapiens CD44R5 protein. 28 6.2
S66400-1|AAB27918.2| 425|Homo sapiens CD44R4 protein. 28 6.2
M59040-1|AAA51950.1| 361|Homo sapiens cell adhesion molecule pr... 28 6.2
M25078-1|AAA36138.1| 293|Homo sapiens protein ( Human Hermes an... 28 6.2
L05424-4|AAB13624.1| 361|Homo sapiens cell surface glycoprotein... 28 6.2
L05423-2|AAB13622.1| 294|Homo sapiens cell surface glycoprotein... 28 6.2
BC067348-1|AAH67348.1| 361|Homo sapiens CD44 molecule (Indian b... 28 6.2
AY101193-1|AAM50041.1| 361|Homo sapiens CD44 antigen protein. 28 6.2
AL832642-1|CAD89965.1| 361|Homo sapiens hypothetical protein pr... 28 6.2
AL133330-7|CAC10349.1| 271|Homo sapiens CD44 molecule (Indian b... 28 6.2
AL133330-6|CAC10348.1| 338|Homo sapiens CD44 molecule (Indian b... 28 6.2
AK127075-1|BAC86814.1| 1332|Homo sapiens protein ( Homo sapiens ... 28 6.2
AB028980-1|BAA83009.1| 977|Homo sapiens KIAA1057 protein protein. 28 6.2
U36619-1|AAC16921.1| 176|Homo sapiens Y-chromosome RNA recognit... 27 8.2
AF026564-1|AAC16916.1| 318|Homo sapiens RNA binding protein pro... 27 8.2
>X66733-1|CAA47271.1| 699|Homo sapiens epican protein.
Length = 699
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 554 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 588
>X56794-1|CAA40133.1| 493|Homo sapiens CD44R1 protein.
Length = 493
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 348 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 382
>X55150-1|CAA38951.1| 493|Homo sapiens CD44E (epithelial form)
protein.
Length = 493
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 348 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 382
>S82326-1|AAD14389.1| 177|Homo sapiens CD44 protein.
Length = 177
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 118 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 152
>L05424-5|AAB13626.1| 668|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 668
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 523 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 557
>L05424-3|AAB13627.1| 493|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 493
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 348 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 382
>L05424-2|AAB13625.1| 691|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 691
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 546 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 580
>L05424-1|AAB13628.1| 742|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 742
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 597 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 631
>L05423-1|AAB13623.1| 675|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 675
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 597 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 631
>EF581837-1|ABQ59315.1| 429|Homo sapiens CD44 variant protein.
Length = 429
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 284 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 318
>BC004372-1|AAH04372.1| 699|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 699
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 554 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 588
>AY101192-1|AAM50040.1| 493|Homo sapiens CD44 antigen protein.
Length = 493
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 348 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 382
>AL133330-5|CAC10345.1| 676|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 676
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 531 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 565
>AL133330-4|CAC10347.1| 719|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 719
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 574 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 608
>AL133330-3|CAC10346.1| 470|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 470
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 325 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 359
>AJ251595-1|CAB61878.1| 742|Homo sapiens transmembrane glycoprotein
protein.
Length = 742
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 169 NVLGPYNGTLQTVHPSGGKTIPHIPSSDGHINWRQ 273
NV +G T HPSGG H SDGH + Q
Sbjct: 597 NVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQ 631
>BC030541-1|AAH30541.1| 466|Homo sapiens WD repeat domain 1
protein.
Length = 466
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 187 TVHKNGGKSYIYSGSHDGHINY 208
>BC002489-1|AAH02489.1| 606|Homo sapiens WD repeat domain 1
protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>BC000201-1|AAH00201.1| 606|Homo sapiens WD repeat domain 1
protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>AK222897-1|BAD96617.1| 606|Homo sapiens WD repeat-containing
protein 1 isoform 1 variant protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>AK222764-1|BAD96484.1| 606|Homo sapiens WD repeat-containing
protein 1 isoform 1 variant protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>AF020260-1|AAD05045.1| 534|Homo sapiens WDR1 protein protein.
Length = 534
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>AF020056-1|AAD05044.1| 606|Homo sapiens WDR1 protein protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>AB209746-1|BAD92983.1| 624|Homo sapiens WD repeat-containing
protein 1 isoform 1 variant protein.
Length = 624
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 345 TVHKNGGKSYIYSGSHDGHINY 366
>AB010427-1|BAA31855.2| 606|Homo sapiens NORI-1 protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINW 267
TVH +GGK+ + S DGHIN+
Sbjct: 327 TVHKNGGKSYIYSGSHDGHINY 348
>M24915-1|AAA35674.1| 361|Homo sapiens protein ( Human CDw44
antigen, complete cds. ).
Length = 361
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHESESDGHSHGSQ 250
>U40373-1|AAA82949.1| 361|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>S66400-2|AAB27919.1| 395|Homo sapiens CD44R5 protein.
Length = 395
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 261 TFHPSGGSHTTHGSESDGHSHGSQ 284
>S66400-1|AAB27918.2| 425|Homo sapiens CD44R4 protein.
Length = 425
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 291 TFHPSGGSHTTHGSESDGHSHGSQ 314
>M59040-1|AAA51950.1| 361|Homo sapiens cell adhesion molecule
protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>M25078-1|AAA36138.1| 293|Homo sapiens protein ( Human Hermes
antigen gp90 homing receptor mRNA, 3' end. ).
Length = 293
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 226 TFHPSGGSHTTHGSESDGHSHGSQ 249
>L05424-4|AAB13624.1| 361|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>L05423-2|AAB13622.1| 294|Homo sapiens cell surface glycoprotein
CD44 protein.
Length = 294
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>BC067348-1|AAH67348.1| 361|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>AY101193-1|AAM50041.1| 361|Homo sapiens CD44 antigen protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>AL832642-1|CAD89965.1| 361|Homo sapiens hypothetical protein
protein.
Length = 361
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 227 TFHPSGGSHTTHGSESDGHSHGSQ 250
>AL133330-7|CAC10349.1| 271|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 271
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 204 TFHPSGGSHTTHGSESDGHSHGSQ 227
>AL133330-6|CAC10348.1| 338|Homo sapiens CD44 molecule (Indian
blood group) protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 202 TVHPSGGKTIPHIPSSDGHINWRQ 273
T HPSGG H SDGH + Q
Sbjct: 204 TFHPSGGSHTTHGSESDGHSHGSQ 227
>AK127075-1|BAC86814.1| 1332|Homo sapiens protein ( Homo sapiens cDNA
FLJ45132 fis, clone BRAWH3037979, highly similar to
Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15).
).
Length = 1332
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 107 ILIFGFEYYS*SSVQLNTVVKMFWGLIMEPY 199
++ FGF++ S S++ + ++ W L MEPY
Sbjct: 1135 LMRFGFDWESGRSIKYDEQIRFPWMLNMEPY 1165
>AB028980-1|BAA83009.1| 977|Homo sapiens KIAA1057 protein protein.
Length = 977
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 107 ILIFGFEYYS*SSVQLNTVVKMFWGLIMEPY 199
++ FGF++ S S++ + ++ W L MEPY
Sbjct: 242 LMRFGFDWESGRSIKYDEQIRFPWMLNMEPY 272
>U36619-1|AAC16921.1| 176|Homo sapiens Y-chromosome RNA recognition
motif protein protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 187 NGTLQTVHPSGGKTIPHIPSSDGHIN 264
+G+L++ S G T P +PS +GH++
Sbjct: 101 SGSLRSARGSSGGTRPWLPSHEGHLD 126
>AF026564-1|AAC16916.1| 318|Homo sapiens RNA binding protein
protein.
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 187 NGTLQTVHPSGGKTIPHIPSSDGHIN 264
+G+L++ S G T P +PS +GH++
Sbjct: 106 SGSLRSARGSSGGTRPWLPSHEGHLD 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,669,099
Number of Sequences: 237096
Number of extensions: 1002250
Number of successful extensions: 2148
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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