Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O10
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 28 0.97
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 3.0
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484... 27 3.0
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593 26 5.2
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112... 26 5.2
05_03_0580 + 15730927-15731271,15731353-15731937 26 5.2
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 25 6.8
05_04_0280 - 19752112-19752451,19754104-19755587 25 9.0
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 25 9.0
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 125 KQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGR 241
+ + A E+ + E ESP K + +E PES KE R
Sbjct: 736 RANEAKEKAATAENSESPESKKEKENSENPESKEKEKER 774
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 122 EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGR 241
EK+D EE E K+ +K K+ E E NG E +
Sbjct: 252 EKEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDK 291
>03_03_0168 -
15047383-15047847,15048085-15048192,15048313-15048464,
15048555-15048752,15049553-15050856,15051281-15051354,
15051458-15051492,15052853-15053015
Length = 832
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 140 PEEVTSTEVKESPIKKSPTKKTEVPESNG 226
P +V + E+P+ K+PT K E P G
Sbjct: 200 PPKVNAVATHEAPLSKAPTDKGEEPPIAG 228
>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
Length = 129
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 162 KSRNLQLRNLPPKKLKY 212
K R + R+LPPKK+KY
Sbjct: 5 KERAAESRSLPPKKVKY 21
>05_06_0212 +
26410330-26410419,26410562-26410846,26411005-26411208,
26411636-26411692,26411859-26412926
Length = 567
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 122 EKQDAAPEEVTSTE-VKESPIKKSPTKKTEVPESNGKEN 235
+ + + EE STE +K S + S + KTE PE NG +N
Sbjct: 446 DMEQRSKEEPLSTESLKSSKRRSSFSTKTEYPE-NGSKN 483
>05_03_0580 + 15730927-15731271,15731353-15731937
Length = 309
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 187 FLNWRFLDFRGSHLFGCGVLLF 122
F NW F+ F GS + G VL++
Sbjct: 187 FFNWYFIFFYGSAVLGSTVLVY 208
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 140 PEEVTSTEVKESPIKKSPTKKTEVPESNGKENG 238
P EV E + SP KS E S KENG
Sbjct: 1165 PSEVVDDEDQRSPPPKSDHSLIEKESSEVKENG 1197
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 239 CRSLYHCSQVL 207
CRSLYHC V+
Sbjct: 422 CRSLYHCKMVM 432
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 110 DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVP 214
D ++EK P E ++ ++ E I++ + TEVP
Sbjct: 234 DESIEKPADEPIEKSADQITERSIEQPAERVTEVP 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,349,108
Number of Sequences: 37544
Number of extensions: 75298
Number of successful extensions: 282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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