Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O05
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 206 6e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 129 1e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 126 1e-30
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 82 3e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 7e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 49 2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 5e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 42 3e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.037
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.11
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 1.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 4.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 5.6
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 24 7.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 206 bits (504), Expect = 6e-55
Identities = 98/107 (91%), Positives = 103/107 (96%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 197
ETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Query: 198 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA 338
LTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA
Sbjct: 185 LTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAA 231
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 129 bits (311), Expect = 1e-31
Identities = 57/103 (55%), Positives = 80/103 (77%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 197
ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD
Sbjct: 130 ETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRD 189
Query: 198 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 326
+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+
Sbjct: 190 VTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 126 bits (303), Expect = 1e-30
Identities = 57/100 (57%), Positives = 75/100 (75%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 197
E + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRD 184
Query: 198 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFE 317
T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E
Sbjct: 185 ATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLE 224
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 81.8 bits (193), Expect = 3e-17
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 10/114 (8%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAIL 173
E+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIK 207
Query: 174 RLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA 329
+ LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 208 TMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFS 256
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.5 bits (140), Expect = 7e-11
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +3
Query: 96 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 275
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 276 DIKEKLCYVALDFEQEM 326
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.8 bits (111), Expect = 2e-07
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 191
E +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
Query: 192 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 335
+ YL+K+ + SF + C+V+ D+ ++A A
Sbjct: 200 SQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHA 247
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.4 bits (100), Expect = 5e-06
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 197
E P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 171 EECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRY 230
Query: 198 LTDYLMKILTERGYSFTTTAEREIVRDIKE 287
+T +L +L E + ++ + DI E
Sbjct: 231 MTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 41.5 bits (93), Expect = 3e-05
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 18 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 197
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 198 LTDYLMKILTERGY 239
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.037
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +3
Query: 54 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 233
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 234 GYSF 245
+ +
Sbjct: 340 HFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.11
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 22 PSTHPPCT*LSRPCSHC-TRPV--VPPVSCWIPAMVYPTQYPSTRVTPYRTPSCVWT*PV 192
P HPP LS+P S P+ VPPV + + P PS P PS P+
Sbjct: 987 PKDHPPSAPLSKPVSTSPAAPLARVPPVP-KLSSKAPPVPLPSADAPPIPVPSTAPPVPI 1045
Query: 193 ATS 201
TS
Sbjct: 1046 PTS 1048
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 79 PVVPPVSCWIPAMVYPTQYPSTRVTPY 159
P+ WIP MVYP + T+ TP+
Sbjct: 513 PIYSKSDGWIPVMVYP--FIDTKQTPF 537
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 4.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 108 SGDGVSHTVPIYEGYALP 161
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 79 PVVPPVSCWIPAMVYPTQYPSTRVTPYRTPS 171
PV PV + P M P+Q+ S +P TP+
Sbjct: 599 PVGYPVPGYTPYMRNPSQHTSVAPSPNGTPT 629
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 23.8 bits (49), Expect = 7.5
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 302 NVAEFLLDVANDFTLGGGGERVTTLCENLHQIVCEVATG*VQTQDGVR*GVTLVDGYCVG 123
N A+ L+D +TL G ER T E+ + V + +T+ + G+T+V C+G
Sbjct: 78 NSAQSLIDAGITYTLTGHSERRTIFKES-DEFVAD------KTKFALEQGLTVV--ACIG 128
Query: 122 YTIA 111
T+A
Sbjct: 129 ETLA 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,554
Number of Sequences: 5004
Number of extensions: 28526
Number of successful extensions: 86
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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