Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O05
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   5.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 2   LFGTRRDLQHTRHVRSYPGRALTVRVRSYHRYRAGFRRWCIPHSTHLRGLRPTARHPASG 181
           L G RR  Q+   + S    + ++  +++HR    F   C P   +L  +     HP + 
Sbjct: 40  LMGRRRWKQYQDTLYSGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS 99

Query: 182 LSRSRP 199
            S S P
Sbjct: 100 -STSLP 104


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 221
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +1

Query: 94  VSCWIPAMVYPTQYPSTRVTP--YRTPSCVW 180
           V+CW+P  +     P   V P     P+  W
Sbjct: 316 VACWLPFFILYLATPFVPVEPPDILMPALTW 346


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 23  LQHTRHVRSYPGRALTVRVRSYHR 94
           + + R+   Y G   T  + SYHR
Sbjct: 56  IYNPRYPLPYSGSKCTWTITSYHR 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 4   IRHEARPSTHPPCT*LSRPCSHCTRPVVPPVS 99
           I HE    T   C+   RP S  T     P S
Sbjct: 869 ISHENNQPTMNKCSDRKRPASQATSVKAEPGS 900


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 121 YPTQYPSTRVTPY 159
           +  +YP+  VTPY
Sbjct: 434 FQCRYPNASVTPY 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,749
Number of Sequences: 438
Number of extensions: 2429
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)