Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O04
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    69   2e-13
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    67   1e-12
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    29   0.20 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   1.9  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    26   1.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.3  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   4.3  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   5.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   5.7  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    24   7.6  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   7.6  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 43/88 (48%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +3

Query: 87  LAKRVLQTKPLKL-GQLG*RAFKPIHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 263
           L KR L  +P +  GQL  R      + FVR +VREV G A YE+R MEL++ S+DKRA 
Sbjct: 15  LTKRQLPERPSRRKGQLSKR------TSFVRSIVREVAGFAPYERRVMELIRNSQDKRAR 68

Query: 264 KFLKRRLGTHIRAIRKREELSNVLTQMR 347
           K  K+RLGT  RA  K EEL++V+   R
Sbjct: 69  KLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 34/60 (56%), Positives = 43/60 (71%)
 Frame = +3

Query: 168 FVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLTQMR 347
           FVR +VREV G A YE+R MEL++ S+DKRA K  K+RLGT  RA  K EEL++V+   R
Sbjct: 37  FVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 192  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRA-IRKREELSNVLTQMR 347
            ++ HA      ++ L+VSKD       KRR+ THI   I +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 253 LSFDTLSNSIALFSYCACPTTS 188
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 89  GKKGITDKALKIRPARLKGIQTNTL 163
           GKK   D  L+++PA L G  T T+
Sbjct: 4   GKKDYIDSPLRMQPASLSGASTPTI 28


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 139 KGHSNQYTLSLSAIWFVKLLGTHSMRRGQWN 231
           KG+ NQ  L+ +   FV++L  H +   +W+
Sbjct: 824 KGYDNQIILNSTYNEFVEVLRNHELPYSEWS 854


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 180 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL 284
           ++RE +G   + K  +     ++ K ALKF+ R+L
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQL 69


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 43  RNWSAKRPQNDKDIRWQKGY 102
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 241 TLSNSIALFSYCACPTTSRTKSRTNLECIGLN 146
           T+++S  LF+  A   T+ TKS  N+EC   N
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECYCTN 881


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 147 MPFSLAGLILRALSVIPFLPADIFVVLW 64
           M F  A +I   LS +PF+  D+  +LW
Sbjct: 139 MSFWGATVITNLLSAVPFIGDDLVHLLW 166


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 263  KGALIFRYFEQFHCPL--LILCVPNNFTNQI 177
            KG  I   F     PL  LI CVPNNF  ++
Sbjct: 1117 KGWAISIVFGVISIPLGALIRCVPNNFLRKV 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,491
Number of Sequences: 5004
Number of extensions: 28079
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)