Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O04
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               106   2e-23
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   106   2e-23
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   106   2e-23
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   106   2e-23
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   106   2e-23
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    60   2e-09
BC125162-1|AAI25163.1|  544|Homo sapiens NBPF4 protein protein.        32   0.61 
BC043522-1|AAH43522.1|  410|Homo sapiens NBPF5 protein protein.        32   0.61 
AL392088-1|CAI23469.1|  649|Homo sapiens novel protein similar t...    32   0.61 
AL390038-2|CAH70399.1|  649|Homo sapiens novel protein similar t...    32   0.61 
AL359258-3|CAI14514.1|  638|Homo sapiens novel protein protein.        32   0.61 
AY256443-1|AAP78939.1|  489|Homo sapiens collagenase-3 splice va...    29   7.5  
EF178036-1|ABM67191.1|  125|Homo sapiens immunoglobulin heavy ch...    28   9.9  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +3

Query: 159 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLT 338
           H+KFVRD++REV G A YE+RAMELLKVSKDKRALKF+K+R+GTHIRA RKREELSNVL 
Sbjct: 36  HTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLA 95

Query: 339 QMR 347
            MR
Sbjct: 96  AMR 98



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 23 MAPRFEIAIGLRKGHKTTK 79
          MA R+ +A+GL KGHK TK
Sbjct: 1  MALRYPMAVGLNKGHKVTK 19


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +3

Query: 159 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLT 338
           H+KFVRD++REV G A YE+RAMELLKVSKDKRALKF+K+R+GTHIRA RKREELSNVL 
Sbjct: 36  HTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLA 95

Query: 339 QMR 347
            MR
Sbjct: 96  AMR 98



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 23 MAPRFEIAIGLRKGHKTTK 79
          MA R+ +A+GL KGHK TK
Sbjct: 1  MALRYPMAVGLNKGHKVTK 19


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +3

Query: 159 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLT 338
           H+KFVRD++REV G A YE+RAMELLKVSKDKRALKF+K+R+GTHIRA RKREELSNVL 
Sbjct: 36  HTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLA 95

Query: 339 QMR 347
            MR
Sbjct: 96  AMR 98



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 23 MAPRFEIAIGLRKGHKTTK 79
          MA R+ +A+GL KGHK TK
Sbjct: 1  MALRYPMAVGLNKGHKVTK 19


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +3

Query: 159 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLT 338
           H+KFVRD++REV G A YE+RAMELLKVSKDKRALKF+K+R+GTHIRA RKREELSNVL 
Sbjct: 36  HTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLA 95

Query: 339 QMR 347
            MR
Sbjct: 96  AMR 98



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 23 MAPRFEIAIGLRKGHKTTK 79
          MA R+ +A+GL KGHK TK
Sbjct: 1  MALRYPMAVGLNKGHKVTK 19


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/63 (79%), Positives = 57/63 (90%)
 Frame = +3

Query: 159 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLT 338
           H+KFVRD++REV G A YE+RAMELLKVSKDKRALKF+K+R+GTHIRA RKREELSNVL 
Sbjct: 36  HTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLA 95

Query: 339 QMR 347
            MR
Sbjct: 96  AMR 98



 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 23 MAPRFEIAIGLRKGHKTTK 79
          MA R+ +A+GL KGHK TK
Sbjct: 1  MALRYPMAVGLNKGHKVTK 19


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = +3

Query: 234 LKVSKDKRALKFLKRRLGTHIRAIRKREELSN 329
           LKVSKDKRALKF+K+R+GTHIRA RKREELSN
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32


>BC125162-1|AAI25163.1|  544|Homo sapiens NBPF4 protein protein.
          Length = 544

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 LEASPRHTHPRDQEA*RAQQRTNTD--EEGGRTPSPPRHH 382
           L     H H  ++EA         D  EE G+ P PPRHH
Sbjct: 242 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 281


>BC043522-1|AAH43522.1|  410|Homo sapiens NBPF5 protein protein.
          Length = 410

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 LEASPRHTHPRDQEA*RAQQRTNTD--EEGGRTPSPPRHH 382
           L     H H  ++EA         D  EE G+ P PPRHH
Sbjct: 301 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 340


>AL392088-1|CAI23469.1|  649|Homo sapiens novel protein similar to
           FLJ32883 containing DUF1220 domains protein.
          Length = 649

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 LEASPRHTHPRDQEA*RAQQRTNTD--EEGGRTPSPPRHH 382
           L     H H  ++EA         D  EE G+ P PPRHH
Sbjct: 253 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 292


>AL390038-2|CAH70399.1|  649|Homo sapiens novel protein similar to
           FLJ32883 containing DUF1220 domains protein.
          Length = 649

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 LEASPRHTHPRDQEA*RAQQRTNTD--EEGGRTPSPPRHH 382
           L     H H  ++EA         D  EE G+ P PPRHH
Sbjct: 253 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 292


>AL359258-3|CAI14514.1|  638|Homo sapiens novel protein protein.
          Length = 638

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 LEASPRHTHPRDQEA*RAQQRTNTD--EEGGRTPSPPRHH 382
           L     H H  ++EA         D  EE G+ P PPRHH
Sbjct: 242 LVVESEHPHDEEEEALNIPPENQNDHEEEEGKAPVPPRHH 281


>AY256443-1|AAP78939.1|  489|Homo sapiens collagenase-3 splice
           variant COL3-9B-2 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 190 SRTKSRTNLECIGLNAL*PSWPNFKGFVCNTLFASGYLCRFVAFSQTN 47
           S + ++  + C  L++L P  P FK F C +L++S     ++ F +T+
Sbjct: 440 SHSVTQAGVHCRNLSSLQPPPPGFKRFSCLSLWSSWDYRLYLFFQRTH 487


>EF178036-1|ABM67191.1|  125|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 125

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 387 CEWWRGGLGVRPPSSSVLVRC 325
           C WW  G  V+ P +SV V C
Sbjct: 4   CSWWSLGAEVKKPGASVKVSC 24


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,296,161
Number of Sequences: 237096
Number of extensions: 1002914
Number of successful extensions: 6323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6323
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)