Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O04
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    87   3e-18
Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.     28   2.8  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     28   2.8  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    28   2.8  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U97009-10|AAC69033.1|  533|Caenorhabditis elegans Udp-glucuronos...    27   6.5  
U29614-8|AAA68812.2|  395|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   6.5  
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    26   8.7  
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    26   8.7  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      26   8.7  
U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate fi...    26   8.7  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    26   8.7  
AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 40/62 (64%), Positives = 50/62 (80%)
 Frame = +3

Query: 162 SKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVLTQ 341
           +K VR+LVRE+ G A YE+R +E+L++SKDKRALKFLKRR+GTH RA  KREEL NV+  
Sbjct: 39  TKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIA 98

Query: 342 MR 347
            R
Sbjct: 99  QR 100


>Z81134-4|CAB03451.1|  322|Caenorhabditis elegans Hypothetical
           protein T28D6.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 9   VNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTKPLKLGQL 134
           V  +SWL   K +L+C  +   + YP AK  ++   L  G L
Sbjct: 168 VMQRSWLETDKDRLICSHSVCHEDYPPAKGCIRATVLISGYL 209


>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 147 MPFSLAGLILRALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>Z78059-4|CAB01487.2|  995|Caenorhabditis elegans Hypothetical
           protein C34B4.1a protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 147 MPFSLAGLILRALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L AL++  FLP   + +LW  +R I+
Sbjct: 587 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 620


>AY084081-1|AAM08091.1| 1045|Caenorhabditis elegans MAX-1B protein.
          Length = 1045

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 147 MPFSLAGLILRALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L AL++  FLP   + +LW  +R I+
Sbjct: 637 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 670


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 147 MPFSLAGLILRALSVIPFLPADIFVVLWPFRRPIA 43
           MPF L G  L AL++  FLP   + +LW  +R I+
Sbjct: 691 MPFGLQGWKLLALTIPLFLPKQ-YSLLWLLKRHIS 724


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 329 VAELFTLPDRADVCAEATLQELK 261
           + E+ TL D ADV AE T+ ELK
Sbjct: 684 ICEVVTLFDEADVRAEMTISELK 706


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    GQSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKALKIRPARLKGIQTNTL 163
            G S++   R E+A   +K  K +K+ A K+   D+ALK     + G +   L
Sbjct: 2795 GVSKLNEARDEVAKMQKKAGKKSKLLAEKQAEADEALKAITESMSGAEDQKL 2846


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 171 VRDLVREVVGHAQYEKRAMELLKV 242
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>U97009-10|AAC69033.1|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein11 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 FKPIHSKFVRDLVREVVGHAQYEKRAMELLKV 242
           F  +  K + + VR++V + +YE++A ELL V
Sbjct: 423 FDLVDGKKLTETVRDLVTNPKYEQKAKELLDV 454


>U29614-8|AAA68812.2|  395|Caenorhabditis elegans Hypothetical
           protein F18E9.7 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
 Frame = +3

Query: 12  NPKSWLPDLKSQL-VCEKATKRQRYPLAKRVLQTKPL-KLGQLG*RAFKPIHSKFVRDLV 185
           N + + P LKSQ  V +     +   L +   + + + K GQL       +    ++DLV
Sbjct: 66  NNEVYQPLLKSQAHVVKSPLDDEDLALVQEYFEDQIINKTGQLKYSTLAGVEKSLIKDLV 125

Query: 186 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAIRKREELSNVL 335
           R ++   +Y    M LL      + L+ +K  L   I+ + +++  S VL
Sbjct: 126 RIIMKDDEY----MLLLNNPSFPKVLQMIKSMLREPIQQVLQQQIWSKVL 171


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 180 LVREVVGHAQYEKRAMELLKV 242
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 246 KDKRALKFLKRRLGTHIRAIRKREELSNVL 335
           K+K+ L+ L  RLG +I  ++K EE +  L
Sbjct: 49  KEKKTLQGLNDRLGNYIDRVKKLEEQNRKL 78


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
           protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 137
           N K  + DL+ +L  EKA K+     L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  NPKSWLPDLKSQLVCEKATKRQRY-PLAKRVLQTKPLKLGQLG 137
           N K  + DL+ +L  EKA K+     L + + + +PLK G+ G
Sbjct: 813 NDKQTIADLRKKLDLEKAHKKAVINKLEEEMAKRQPLKKGEKG 855


>U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform a protein.
          Length = 558

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 246 KDKRALKFLKRRLGTHIRAIRKREELSNVL 335
           K+K+ L+ L  RLG +I  ++K EE +  L
Sbjct: 49  KEKKTLQGLNDRLGNYIDRVKKLEEQNRKL 78


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 246 KDKRALKFLKRRLGTHIRAIRKREELSNVL 335
           K+K+ L+ L  RLG +I  ++K EE +  L
Sbjct: 80  KEKKTLQGLNDRLGNYIDRVKKLEEQNRKL 109


>AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical
           protein Y54G11A.2 protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 81  YPLAKRVLQTKPLKLGQLG*RAFKPIHSKFVRDLVREVVGHAQYEKRAMEL-LKVSKDKR 257
           Y +   + +T  + +GQ+G  + K +    V   + E+V   +  +R  ++  K  +D R
Sbjct: 91  YTMWSNLKKTGDMAVGQVGFHSHKQVKHTVVPTKINEIVNRLEKTRRKDDIDYKEERDAR 150

Query: 258 ALKFLKRRLGTHIRAIRKREELSNVLTQ 341
             K  +R+    +   RK  E   +L Q
Sbjct: 151 DAK--ERQKLKKLEQERKDREKKEMLAQ 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,688
Number of Sequences: 27780
Number of extensions: 163987
Number of successful extensions: 538
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)